miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 130740 0.67 0.999402
Target:  5'- aGUCccccGGCgccccucgccgGUGUCCgGAGUCACCGUGg -3'
miRNA:   3'- gCAGu---UUG-----------UACAGG-CUUAGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 207328 0.67 0.999173
Target:  5'- cCGUCuuGCAagauguuaguggugaUGUCgcugaaauugCGGAUCACCGUGUc -3'
miRNA:   3'- -GCAGuuUGU---------------ACAG----------GCUUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 98025 0.68 0.998115
Target:  5'- gCGUCGGACGcuccUCCGGAcgaaaCGCCGCGg -3'
miRNA:   3'- -GCAGUUUGUac--AGGCUUa----GUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 172648 0.68 0.998115
Target:  5'- aGUCGAGCuugcacgcUGUCCGGgauggAUCGCaagaCGCGCc -3'
miRNA:   3'- gCAGUUUGu-------ACAGGCU-----UAGUG----GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 104411 0.68 0.998423
Target:  5'- aCGUUcggcAGCAUGUCCGAGcgCaauGCCGcCGCc -3'
miRNA:   3'- -GCAGu---UUGUACAGGCUUa-G---UGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 170076 0.68 0.998115
Target:  5'- uCGUCAGuugGCGUc-CCGAGUCGCCGUc- -3'
miRNA:   3'- -GCAGUU---UGUAcaGGCUUAGUGGCGcg -5'
1697 3' -49.4 NC_001347.2 + 65543 0.68 0.998687
Target:  5'- gCGUC-AACcUG-CCGGcUCACuCGCGCu -3'
miRNA:   3'- -GCAGuUUGuACaGGCUuAGUG-GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 88223 0.68 0.998687
Target:  5'- cCGcUCAcGC-UGUCCGAgggGUCGCUGcCGCc -3'
miRNA:   3'- -GC-AGUuUGuACAGGCU---UAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 198567 0.68 0.998687
Target:  5'- aGUCAAACAacgCCGGcgUGCuCGCGUa -3'
miRNA:   3'- gCAGUUUGUacaGGCUuaGUG-GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 153789 0.68 0.998913
Target:  5'- cCGcUCAGGCcgugguaGUCCGAGUCGCCuccGgGCg -3'
miRNA:   3'- -GC-AGUUUGua-----CAGGCUUAGUGG---CgCG- -5'
1697 3' -49.4 NC_001347.2 + 99524 0.68 0.998913
Target:  5'- aCGUCGAACGcgaucUGcggCCGggUCGCgCG-GCa -3'
miRNA:   3'- -GCAGUUUGU-----ACa--GGCuuAGUG-GCgCG- -5'
1697 3' -49.4 NC_001347.2 + 93766 0.67 0.999104
Target:  5'- gCGUgAuAgAUGaauUCCucGUCGCCGCGCa -3'
miRNA:   3'- -GCAgUuUgUAC---AGGcuUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 177605 0.67 0.999087
Target:  5'- --cCGAGCG-GUCCGuggacuuGGUgGCCGCGCu -3'
miRNA:   3'- gcaGUUUGUaCAGGC-------UUAgUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 52494 0.66 0.999846
Target:  5'- gGUguGGC-UGUCUGuuuGUCugUGCGCc -3'
miRNA:   3'- gCAguUUGuACAGGCu--UAGugGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.