miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 5' -57.4 NC_001347.2 + 157436 0.66 0.923984
Target:  5'- gAGCGGgaGGCGgUGacGGCGCUCUUUCAg -3'
miRNA:   3'- gUUGUCg-CCGCgAU--CUGCGAGGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 100477 0.66 0.923984
Target:  5'- gGACAGCGcGCGCccGGCGgUCacggaUCCGc -3'
miRNA:   3'- gUUGUCGC-CGCGauCUGCgAGg----AGGU- -5'
1697 5' -57.4 NC_001347.2 + 75426 0.66 0.923984
Target:  5'- gCGGCAGCGGCGC-AGA-GCgaaCUCa- -3'
miRNA:   3'- -GUUGUCGCCGCGaUCUgCGag-GAGgu -5'
1697 5' -57.4 NC_001347.2 + 2450 0.66 0.918573
Target:  5'- gAGCGGCcGCGCUgGGACGCgcugcaCCUgCAc -3'
miRNA:   3'- gUUGUCGcCGCGA-UCUGCGa-----GGAgGU- -5'
1697 5' -57.4 NC_001347.2 + 65724 0.66 0.918573
Target:  5'- uGGCGGCGGUGgaGGGCGCgcggcaaCUCgAg -3'
miRNA:   3'- gUUGUCGCCGCgaUCUGCGag-----GAGgU- -5'
1697 5' -57.4 NC_001347.2 + 174221 0.66 0.918573
Target:  5'- aCGGCAGCgucacagagGGCGUUcGGACGa-CCUCCGc -3'
miRNA:   3'- -GUUGUCG---------CCGCGA-UCUGCgaGGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 87628 0.66 0.912936
Target:  5'- gCGACGGCGGCuGCUGu-UGCUCg-CCAg -3'
miRNA:   3'- -GUUGUCGCCG-CGAUcuGCGAGgaGGU- -5'
1697 5' -57.4 NC_001347.2 + 151893 0.66 0.907076
Target:  5'- gGACGGCGcCGC-AGG-GUUCCUCCGa -3'
miRNA:   3'- gUUGUCGCcGCGaUCUgCGAGGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 80813 0.66 0.907076
Target:  5'- cCGGCAGCGGCauCUAGAcCGCcgcCCUCg- -3'
miRNA:   3'- -GUUGUCGCCGc-GAUCU-GCGa--GGAGgu -5'
1697 5' -57.4 NC_001347.2 + 66517 0.66 0.907076
Target:  5'- aGGCGGCGGCGau---CGCagCCUCCu -3'
miRNA:   3'- gUUGUCGCCGCgaucuGCGa-GGAGGu -5'
1697 5' -57.4 NC_001347.2 + 68217 0.66 0.900993
Target:  5'- aGACGGCGgaaGCGgUAGACGCggcgCCgcaaCCAc -3'
miRNA:   3'- gUUGUCGC---CGCgAUCUGCGa---GGa---GGU- -5'
1697 5' -57.4 NC_001347.2 + 119087 0.66 0.900993
Target:  5'- --cCAGCGGCGC-AGccGCGCUaugcggcccggCCUCCc -3'
miRNA:   3'- guuGUCGCCGCGaUC--UGCGA-----------GGAGGu -5'
1697 5' -57.4 NC_001347.2 + 75854 0.66 0.900993
Target:  5'- aCGACGuCGGcCGCgGGGCGCagcgCCUCCu -3'
miRNA:   3'- -GUUGUcGCC-GCGaUCUGCGa---GGAGGu -5'
1697 5' -57.4 NC_001347.2 + 1906 0.66 0.89469
Target:  5'- gCGGCuGGCuGGCGCUGGGCGCggugCUgCCc -3'
miRNA:   3'- -GUUG-UCG-CCGCGAUCUGCGa---GGaGGu -5'
1697 5' -57.4 NC_001347.2 + 172051 0.66 0.89469
Target:  5'- --cCAGCGcGCGCUGGgaaGCGCUgCgcgCCGa -3'
miRNA:   3'- guuGUCGC-CGCGAUC---UGCGAgGa--GGU- -5'
1697 5' -57.4 NC_001347.2 + 190167 0.67 0.886841
Target:  5'- gCAugGGgGGCGCcaaaacgccgucGGACGCcgugcagaacaUCCUCCAa -3'
miRNA:   3'- -GUugUCgCCGCGa-----------UCUGCG-----------AGGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 1749 0.67 0.873082
Target:  5'- aCGACGGUGGCGCUgcAGACGCcgggcaggcgaCUgCAg -3'
miRNA:   3'- -GUUGUCGCCGCGA--UCUGCGag---------GAgGU- -5'
1697 5' -57.4 NC_001347.2 + 226981 0.67 0.867348
Target:  5'- --cCGGCGGCGgac-ACGCUCCUCUc -3'
miRNA:   3'- guuGUCGCCGCgaucUGCGAGGAGGu -5'
1697 5' -57.4 NC_001347.2 + 88182 0.67 0.860001
Target:  5'- cCAACGGCGGaCGCaacGGGCGUuugCgUCCAc -3'
miRNA:   3'- -GUUGUCGCC-GCGa--UCUGCGa--GgAGGU- -5'
1697 5' -57.4 NC_001347.2 + 163965 0.68 0.836816
Target:  5'- uCAGCAGCuGCGUgcucAGACGgUCCaggUCCAu -3'
miRNA:   3'- -GUUGUCGcCGCGa---UCUGCgAGG---AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.