miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 5' -57.4 NC_001347.2 + 24628 0.68 0.836816
Target:  5'- cCGACAGCuGGUGCUAuuacuCGCcggCCUCCu -3'
miRNA:   3'- -GUUGUCG-CCGCGAUcu---GCGa--GGAGGu -5'
1697 5' -57.4 NC_001347.2 + 183896 0.68 0.820469
Target:  5'- gAGCAGCaGGCGCcGG-UGCUCgUCCc -3'
miRNA:   3'- gUUGUCG-CCGCGaUCuGCGAGgAGGu -5'
1697 5' -57.4 NC_001347.2 + 186929 0.68 0.812049
Target:  5'- aCAAguCAGCGGCGCUuaaaAGAaaacCGCguauccgCCUCCGc -3'
miRNA:   3'- -GUU--GUCGCCGCGA----UCU----GCGa------GGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 97014 0.68 0.803475
Target:  5'- -cGCGGCGGCGgaGGAUcCaaggCCUCCAg -3'
miRNA:   3'- guUGUCGCCGCgaUCUGcGa---GGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 22204 0.68 0.803475
Target:  5'- -cGCAGCcacGCGCUGGugGCcgaacagcagcUCUUCCAa -3'
miRNA:   3'- guUGUCGc--CGCGAUCugCG-----------AGGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 82453 0.69 0.794755
Target:  5'- cCAACA-CGGCGCU--ACGCUgCUCUAg -3'
miRNA:   3'- -GUUGUcGCCGCGAucUGCGAgGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 47344 0.69 0.785895
Target:  5'- aAACAGCGGacagucccaCGCUGuuucuguuGugGCUCuCUCCAg -3'
miRNA:   3'- gUUGUCGCC---------GCGAU--------CugCGAG-GAGGU- -5'
1697 5' -57.4 NC_001347.2 + 1975 0.69 0.776905
Target:  5'- gGACGGCGGCGg-GGACGacgUCCcgCCAg -3'
miRNA:   3'- gUUGUCGCCGCgaUCUGCg--AGGa-GGU- -5'
1697 5' -57.4 NC_001347.2 + 107784 0.69 0.767793
Target:  5'- aCAGCucuCGGUGCUGGGCGCU--UCCAu -3'
miRNA:   3'- -GUUGuc-GCCGCGAUCUGCGAggAGGU- -5'
1697 5' -57.4 NC_001347.2 + 59077 0.7 0.720687
Target:  5'- -cGCGGCGGUuuUGGugGCgcggCCUCCu -3'
miRNA:   3'- guUGUCGCCGcgAUCugCGa---GGAGGu -5'
1697 5' -57.4 NC_001347.2 + 63834 0.71 0.651951
Target:  5'- gCGAUGGCGGgGCUGGuuGCUUUUCCc -3'
miRNA:   3'- -GUUGUCGCCgCGAUCugCGAGGAGGu -5'
1697 5' -57.4 NC_001347.2 + 157262 0.72 0.582453
Target:  5'- cCGGCGcaguuuGCGGCGC-AGACGUcggcggUCCUCCAg -3'
miRNA:   3'- -GUUGU------CGCCGCGaUCUGCG------AGGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 109472 0.76 0.415332
Target:  5'- cCGGCGGCGGCGCcauGGCGggcgCCUCCAc -3'
miRNA:   3'- -GUUGUCGCCGCGau-CUGCga--GGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 173541 0.76 0.398571
Target:  5'- uGGCGGCGGCGgUGGugGCggcagCCUCUc -3'
miRNA:   3'- gUUGUCGCCGCgAUCugCGa----GGAGGu -5'
1697 5' -57.4 NC_001347.2 + 98017 0.8 0.238858
Target:  5'- cCAACc-CGGCGUcGGACGCUCCUCCGg -3'
miRNA:   3'- -GUUGucGCCGCGaUCUGCGAGGAGGU- -5'
1697 5' -57.4 NC_001347.2 + 97411 1.08 0.003694
Target:  5'- gCAACAGCGGCGCUAGACGCUCCUCCAu -3'
miRNA:   3'- -GUUGUCGCCGCGAUCUGCGAGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.