miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16970 5' -51.1 NC_004323.1 + 13261 0.71 0.852052
Target:  5'- ---uGACcACCGACACGUUUAGCGGAc -3'
miRNA:   3'- ucuuCUGcUGGUUGUGCGAGUCGUUU- -5'
16970 5' -51.1 NC_004323.1 + 28570 0.7 0.897867
Target:  5'- gGGAAGuC-AUCAACACGCUCAaGCAc- -3'
miRNA:   3'- -UCUUCuGcUGGUUGUGCGAGU-CGUuu -5'
16970 5' -51.1 NC_004323.1 + 38131 0.69 0.923284
Target:  5'- cGGcGGACGugCAgaugaGCGCGgaCAGCGAAa -3'
miRNA:   3'- -UCuUCUGCugGU-----UGUGCgaGUCGUUU- -5'
16970 5' -51.1 NC_004323.1 + 44657 0.66 0.973426
Target:  5'- -aAAGugGGCCAGCACacuacguacgacguGgUCGGCAAGc -3'
miRNA:   3'- ucUUCugCUGGUUGUG--------------CgAGUCGUUU- -5'
16970 5' -51.1 NC_004323.1 + 46005 0.7 0.883584
Target:  5'- uGAAGACGACgagcgcguCAACAUGUUUAGUAGu -3'
miRNA:   3'- uCUUCUGCUG--------GUUGUGCGAGUCGUUu -5'
16970 5' -51.1 NC_004323.1 + 57358 0.68 0.934383
Target:  5'- ----uGCGACCGACACGaaCAGUAAAa -3'
miRNA:   3'- ucuucUGCUGGUUGUGCgaGUCGUUU- -5'
16970 5' -51.1 NC_004323.1 + 57476 1.07 0.008294
Target:  5'- aAGAAGACGACCAACACGCUCAGCAAAa -3'
miRNA:   3'- -UCUUCUGCUGGUUGUGCGAGUCGUUU- -5'
16970 5' -51.1 NC_004323.1 + 88888 0.72 0.767868
Target:  5'- cGGAAGACGacuuguuGCCGACuCGCagCAGCAAAc -3'
miRNA:   3'- -UCUUCUGC-------UGGUUGuGCGa-GUCGUUU- -5'
16970 5' -51.1 NC_004323.1 + 121146 0.76 0.577118
Target:  5'- uGGAAGACGGCCAcCACGCac-GCAAAa -3'
miRNA:   3'- -UCUUCUGCUGGUuGUGCGaguCGUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.