miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16972 3' -41.3 NC_004323.1 + 64987 1.14 0.037799
Target:  5'- gCUAUAUUUACUAGCGCGCAAACUUACa -3'
miRNA:   3'- -GAUAUAAAUGAUCGCGCGUUUGAAUG- -5'
16972 3' -41.3 NC_004323.1 + 44452 0.74 0.999384
Target:  5'- --uUGUUUACguuuuCGCGUAAACUUGCg -3'
miRNA:   3'- gauAUAAAUGauc--GCGCGUUUGAAUG- -5'
16972 3' -41.3 NC_004323.1 + 93182 0.7 0.999986
Target:  5'- -----aUUACaUAGCGUGCGGGCUguuUGCg -3'
miRNA:   3'- gauauaAAUG-AUCGCGCGUUUGA---AUG- -5'
16972 3' -41.3 NC_004323.1 + 64093 0.7 0.99999
Target:  5'- -------aGCUGGCGaCGCGAGCcgGCa -3'
miRNA:   3'- gauauaaaUGAUCGC-GCGUUUGaaUG- -5'
16972 3' -41.3 NC_004323.1 + 80067 0.7 0.999995
Target:  5'- ------aUAUUGGCGCGCAGcACggACg -3'
miRNA:   3'- gauauaaAUGAUCGCGCGUU-UGaaUG- -5'
16972 3' -41.3 NC_004323.1 + 17291 0.69 0.999998
Target:  5'- -----aUUAUUAGCGCGCAcgucGCUaGCa -3'
miRNA:   3'- gauauaAAUGAUCGCGCGUu---UGAaUG- -5'
16972 3' -41.3 NC_004323.1 + 111269 0.69 0.999999
Target:  5'- -----aUUGgUAGCGCGCGcACUUGg -3'
miRNA:   3'- gauauaAAUgAUCGCGCGUuUGAAUg -5'
16972 3' -41.3 NC_004323.1 + 15350 0.66 1
Target:  5'- ------aUACUGGCuGUGCAAugUUGg -3'
miRNA:   3'- gauauaaAUGAUCG-CGCGUUugAAUg -5'
16972 3' -41.3 NC_004323.1 + 28968 0.66 1
Target:  5'- aUAUGUagGCgucguGCGCGguAACUUGa -3'
miRNA:   3'- gAUAUAaaUGau---CGCGCguUUGAAUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.