miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16973 3' -53.2 NC_004323.1 + 21843 0.77 0.41745
Target:  5'- -uCGCUGCCA-GGCGUCUUcauuAGUAUGCc -3'
miRNA:   3'- uuGCGACGGUaUCGCAGAG----UCAUGCG- -5'
16973 3' -53.2 NC_004323.1 + 33110 0.68 0.871179
Target:  5'- cGCGCUGCCAcAGC-UUUCAcaUACGCc -3'
miRNA:   3'- uUGCGACGGUaUCGcAGAGUc-AUGCG- -5'
16973 3' -53.2 NC_004323.1 + 77604 0.72 0.682692
Target:  5'- aGGCGCcgGCCAcAGCGUCguuGUACGUu -3'
miRNA:   3'- -UUGCGa-CGGUaUCGCAGaguCAUGCG- -5'
16973 3' -53.2 NC_004323.1 + 85994 1.1 0.003103
Target:  5'- cAACGCUGCCAUAGCGUCUCAGUACGCg -3'
miRNA:   3'- -UUGCGACGGUAUCGCAGAGUCAUGCG- -5'
16973 3' -53.2 NC_004323.1 + 100050 0.68 0.892365
Target:  5'- uAACGCUGCagguGCGUCUCcgcguggauaucgAG-ACGCg -3'
miRNA:   3'- -UUGCGACGguauCGCAGAG-------------UCaUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.