miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16973 5' -63 NC_004323.1 + 35308 0.66 0.574432
Target:  5'- cUGCccGAUC-CGCCGCCGCaCCAACa -3'
miRNA:   3'- uGCGc-CUGGaGCGGCGGCGcGGUUGc -5'
16973 5' -63 NC_004323.1 + 10711 0.67 0.536048
Target:  5'- gACGgGGugUcgCGCaaCCGCGCCGACc -3'
miRNA:   3'- -UGCgCCugGa-GCGgcGGCGCGGUUGc -5'
16973 5' -63 NC_004323.1 + 103541 0.67 0.51625
Target:  5'- uUGUGGGCgUCGCCauguacgGCCGCGgcuggaCCGGCGu -3'
miRNA:   3'- uGCGCCUGgAGCGG-------CGGCGC------GGUUGC- -5'
16973 5' -63 NC_004323.1 + 44430 0.67 0.498597
Target:  5'- uUGCGGAUC-CGCCGCCgguuucugauugGCGCgCAAUu -3'
miRNA:   3'- uGCGCCUGGaGCGGCGG------------CGCG-GUUGc -5'
16973 5' -63 NC_004323.1 + 85796 0.69 0.427553
Target:  5'- uGCGCGGACgUUGgCGCgGCGgCGAgGu -3'
miRNA:   3'- -UGCGCCUGgAGCgGCGgCGCgGUUgC- -5'
16973 5' -63 NC_004323.1 + 117865 0.69 0.419096
Target:  5'- -gGCGGuAUCgCGCaCGCUGCGCCAuuGCGc -3'
miRNA:   3'- ugCGCC-UGGaGCG-GCGGCGCGGU--UGC- -5'
16973 5' -63 NC_004323.1 + 31932 0.69 0.386309
Target:  5'- aACGCGGGCCcacgUGCuggCGuuGCGCCAAa- -3'
miRNA:   3'- -UGCGCCUGGa---GCG---GCggCGCGGUUgc -5'
16973 5' -63 NC_004323.1 + 16837 0.7 0.378381
Target:  5'- cACGCGuGACCgcuUCGUCGCCGCaGUCAcACu -3'
miRNA:   3'- -UGCGC-CUGG---AGCGGCGGCG-CGGU-UGc -5'
16973 5' -63 NC_004323.1 + 126912 0.7 0.370563
Target:  5'- -gGCGGACggaUCGCUGCCGCGaCAAa- -3'
miRNA:   3'- ugCGCCUGg--AGCGGCGGCGCgGUUgc -5'
16973 5' -63 NC_004323.1 + 85895 0.7 0.362856
Target:  5'- uGCcCGaGCCaaCGCCGCCGCGCCcGCGc -3'
miRNA:   3'- -UGcGCcUGGa-GCGGCGGCGCGGuUGC- -5'
16973 5' -63 NC_004323.1 + 107059 0.71 0.318985
Target:  5'- cCGCGGcCCUCGuuGUCGCGaaAACa -3'
miRNA:   3'- uGCGCCuGGAGCggCGGCGCggUUGc -5'
16973 5' -63 NC_004323.1 + 73629 0.73 0.221337
Target:  5'- gGCGCaGGACCUgccacugCGCCGCCGC-CCAGa- -3'
miRNA:   3'- -UGCG-CCUGGA-------GCGGCGGCGcGGUUgc -5'
16973 5' -63 NC_004323.1 + 85960 1.07 0.000884
Target:  5'- aACGCGGACCUCGCCGCCGCGCCAACGu -3'
miRNA:   3'- -UGCGCCUGGAGCGGCGGCGCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.