miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16975 3' -56.2 NC_004323.1 + 10663 0.66 0.921739
Target:  5'- aCCGUagccaGgCGCgauuuggauuACGgGCGCCGGAUCGu -3'
miRNA:   3'- -GGCAg----CaGCG----------UGUgCGUGGCCUAGCu -5'
16975 3' -56.2 NC_004323.1 + 118410 0.66 0.891515
Target:  5'- gCGUCGUguUGgACACGaCGCCGGuuUCGu -3'
miRNA:   3'- gGCAGCA--GCgUGUGC-GUGGCCu-AGCu -5'
16975 3' -56.2 NC_004323.1 + 64921 0.66 0.921739
Target:  5'- aCCGUCG-C-CACGCGCgACaacaGGAUgGAu -3'
miRNA:   3'- -GGCAGCaGcGUGUGCG-UGg---CCUAgCU- -5'
16975 3' -56.2 NC_004323.1 + 99238 0.67 0.884795
Target:  5'- gUCGUacauuaCGUCGCGCACGguCCGcGGcCGGc -3'
miRNA:   3'- -GGCA------GCAGCGUGUGCguGGC-CUaGCU- -5'
16975 3' -56.2 NC_004323.1 + 34558 0.67 0.855783
Target:  5'- gUCGUCGUCGuCACGCGCucGCCGccuaaUGAg -3'
miRNA:   3'- -GGCAGCAGC-GUGUGCG--UGGCcua--GCU- -5'
16975 3' -56.2 NC_004323.1 + 77618 0.67 0.884795
Target:  5'- gCGUCGUUGUACguuaGCGCAgacaCGGAUgcCGAc -3'
miRNA:   3'- gGCAGCAGCGUG----UGCGUg---GCCUA--GCU- -5'
16975 3' -56.2 NC_004323.1 + 29208 0.68 0.806512
Target:  5'- gCUGUgugccCGUCGC--GCGUACCGGAgugCGAa -3'
miRNA:   3'- -GGCA-----GCAGCGugUGCGUGGCCUa--GCU- -5'
16975 3' -56.2 NC_004323.1 + 110908 0.68 0.806512
Target:  5'- uCCGUCGgCGagggaaaaAUACGCAUCGGG-CGAa -3'
miRNA:   3'- -GGCAGCaGCg-------UGUGCGUGGCCUaGCU- -5'
16975 3' -56.2 NC_004323.1 + 96672 0.69 0.761169
Target:  5'- -aGUUGUCGCACAUGCAaUUGGcgCGc -3'
miRNA:   3'- ggCAGCAGCGUGUGCGU-GGCCuaGCu -5'
16975 3' -56.2 NC_004323.1 + 99163 1.11 0.00233
Target:  5'- cCCGUCGUCGCACACGCACCGGAUCGAa -3'
miRNA:   3'- -GGCAGCAGCGUGUGCGUGGCCUAGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.