miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16976 3' -49.6 NC_004323.1 + 73482 0.68 0.982515
Target:  5'- -uGGAUGUGauuaaauGCAGcGCgUCGAGUGUCg -3'
miRNA:   3'- cuUUUACAUgu-----CGUC-CG-AGCUCACGG- -5'
16976 3' -49.6 NC_004323.1 + 34066 0.68 0.972517
Target:  5'- -----cGUACAGCGGGgguagCGAGcggGCCa -3'
miRNA:   3'- cuuuuaCAUGUCGUCCga---GCUCa--CGG- -5'
16976 3' -49.6 NC_004323.1 + 43568 0.74 0.790527
Target:  5'- cGAGGAUGUAucCAGCAuugcaucGGCUUGGGcgGCCg -3'
miRNA:   3'- -CUUUUACAU--GUCGU-------CCGAGCUCa-CGG- -5'
16976 3' -49.6 NC_004323.1 + 107091 1.14 0.004301
Target:  5'- cGAAAAUGUACAGCAGGCUCGAGUGCCa -3'
miRNA:   3'- -CUUUUACAUGUCGUCCGAGCUCACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.