miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16977 3' -51.3 NC_004323.1 + 118294 0.66 0.988075
Target:  5'- gGCCGacugaacuUGGGUuucggCGCCuucacgCAugGCCGCc -3'
miRNA:   3'- -CGGU--------ACUCA-----GCGGuuua--GUugCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 42453 0.66 0.988075
Target:  5'- -gCAUu-GUCGCCAA----ACGCCGCu -3'
miRNA:   3'- cgGUAcuCAGCGGUUuaguUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 21870 0.67 0.980662
Target:  5'- uGUCucgaa-CGCCAAcgCGACGCCGUg -3'
miRNA:   3'- -CGGuacucaGCGGUUuaGUUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 12392 0.67 0.978362
Target:  5'- aCUAUGAcUCGCgAAccaAACGCCGCc -3'
miRNA:   3'- cGGUACUcAGCGgUUuagUUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 64324 0.67 0.978362
Target:  5'- gGCCAaagcGUCuuuGCCuaacauAUCGGCGCCGCc -3'
miRNA:   3'- -CGGUacu-CAG---CGGuu----UAGUUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 106406 0.67 0.975866
Target:  5'- uUCAUGAGaUUGCCAAucaAACGCuCGUc -3'
miRNA:   3'- cGGUACUC-AGCGGUUuagUUGCG-GCG- -5'
16977 3' -51.3 NC_004323.1 + 74749 0.67 0.975866
Target:  5'- cCCGUGGGUauggCGCCGcgacaaaugagAGUUAAcCGCUGCa -3'
miRNA:   3'- cGGUACUCA----GCGGU-----------UUAGUU-GCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 100796 0.67 0.974811
Target:  5'- cGCCAUGAaacugauuauccUGCUGuuuGUCGugGCCGCg -3'
miRNA:   3'- -CGGUACUca----------GCGGUu--UAGUugCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 106191 0.67 0.973166
Target:  5'- uGCCGauGGUCGggauCCAAAacUCGACGUCGUc -3'
miRNA:   3'- -CGGUacUCAGC----GGUUU--AGUUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 77702 0.67 0.970253
Target:  5'- uGCCAUGAuacCGCUA-----ACGCCGCu -3'
miRNA:   3'- -CGGUACUca-GCGGUuuaguUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 53807 0.68 0.963762
Target:  5'- cGCCGcaacAGcCGCCAGaAUCgAACGUCGCg -3'
miRNA:   3'- -CGGUac--UCaGCGGUU-UAG-UUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 32436 0.68 0.956341
Target:  5'- cCCAUGucGUCGgCAAG-C-ACGCCGCc -3'
miRNA:   3'- cGGUACu-CAGCgGUUUaGuUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 106608 0.69 0.947948
Target:  5'- cGUUGUG-G-CGCCAAGUgGGCGgCCGCu -3'
miRNA:   3'- -CGGUACuCaGCGGUUUAgUUGC-GGCG- -5'
16977 3' -51.3 NC_004323.1 + 109651 0.69 0.928131
Target:  5'- uGCCAUGAcGUUGCgAGA---GCGCgGCg -3'
miRNA:   3'- -CGGUACU-CAGCGgUUUaguUGCGgCG- -5'
16977 3' -51.3 NC_004323.1 + 116297 0.7 0.890718
Target:  5'- aUguUGGGUCGCCAuuuuUCAacacggACGCCGUu -3'
miRNA:   3'- cGguACUCAGCGGUuu--AGU------UGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 113989 0.72 0.844551
Target:  5'- cGUCAaGAGUCGUUAuuu--GCGCCGCa -3'
miRNA:   3'- -CGGUaCUCAGCGGUuuaguUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 106051 0.75 0.678799
Target:  5'- aGCCAUGGaagugauGUCGCuCAAAcuggugcCGACGCCGCc -3'
miRNA:   3'- -CGGUACU-------CAGCG-GUUUa------GUUGCGGCG- -5'
16977 3' -51.3 NC_004323.1 + 129705 1.14 0.003515
Target:  5'- aGCCAUGAGUCGCCAAAUCAACGCCGCc -3'
miRNA:   3'- -CGGUACUCAGCGGUUUAGUUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.