miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16978 5' -49.3 NC_004323.1 + 14901 0.66 0.998201
Target:  5'- uGAuuGCUGAAcgGAGacgauggguguaaaGACGGCgAUGGCu -3'
miRNA:   3'- gCU--CGAUUUuaCUUg-------------CUGCCG-UGCCG- -5'
16978 5' -49.3 NC_004323.1 + 5428 0.66 0.99724
Target:  5'- --uGCUuacauUGAGCGGuuguuaaauauCGGCACGGUa -3'
miRNA:   3'- gcuCGAuuuu-ACUUGCU-----------GCCGUGCCG- -5'
16978 5' -49.3 NC_004323.1 + 74760 0.67 0.995475
Target:  5'- -uGGCgcuAGUGccCGugGGUAUGGCg -3'
miRNA:   3'- gcUCGauuUUACuuGCugCCGUGCCG- -5'
16978 5' -49.3 NC_004323.1 + 3738 0.67 0.991793
Target:  5'- -uGGCUAAGAaGGGCGGCGGCu--GCc -3'
miRNA:   3'- gcUCGAUUUUaCUUGCUGCCGugcCG- -5'
16978 5' -49.3 NC_004323.1 + 7620 0.68 0.990576
Target:  5'- --uGCUAAauacAAUGAggugcACGACGuGUAUGGCg -3'
miRNA:   3'- gcuCGAUU----UUACU-----UGCUGC-CGUGCCG- -5'
16978 5' -49.3 NC_004323.1 + 4744 0.68 0.98772
Target:  5'- gGGGC-AGGcgGGGCuGGCGGCGgaGGCg -3'
miRNA:   3'- gCUCGaUUUuaCUUG-CUGCCGUg-CCG- -5'
16978 5' -49.3 NC_004323.1 + 46250 0.68 0.986061
Target:  5'- -aAGUaucaUAAAAUGAACGGCGGCgACGa- -3'
miRNA:   3'- gcUCG----AUUUUACUUGCUGCCG-UGCcg -5'
16978 5' -49.3 NC_004323.1 + 9877 0.69 0.9816
Target:  5'- aCGuGCacgucaaaccguUGGAUGACGGCGgCGGCa -3'
miRNA:   3'- -GCuCGauuuu-------ACUUGCUGCCGU-GCCG- -5'
16978 5' -49.3 NC_004323.1 + 129447 0.69 0.98005
Target:  5'- -uGGCUGcGAcugcuUGAA-GACGGCugGGCu -3'
miRNA:   3'- gcUCGAUuUU-----ACUUgCUGCCGugCCG- -5'
16978 5' -49.3 NC_004323.1 + 62310 0.69 0.975086
Target:  5'- uCGGGCgucGAGAUgGAACGGCcGCGCaGCa -3'
miRNA:   3'- -GCUCGa--UUUUA-CUUGCUGcCGUGcCG- -5'
16978 5' -49.3 NC_004323.1 + 124984 0.69 0.975086
Target:  5'- -uAGCUGuuGUcGAACGAcgcuCGGgACGGCg -3'
miRNA:   3'- gcUCGAUuuUA-CUUGCU----GCCgUGCCG- -5'
16978 5' -49.3 NC_004323.1 + 88470 0.71 0.936512
Target:  5'- -cGGUgu-AAUGuuCGGCGGUACGGCg -3'
miRNA:   3'- gcUCGauuUUACuuGCUGCCGUGCCG- -5'
16978 5' -49.3 NC_004323.1 + 85792 0.72 0.931267
Target:  5'- -aGGCUGcgc-GGACGuuGGCGCGGCg -3'
miRNA:   3'- gcUCGAUuuuaCUUGCugCCGUGCCG- -5'
16978 5' -49.3 NC_004323.1 + 73797 0.73 0.894286
Target:  5'- --cGCUAcucUGGGCGGCGGCGCaguGGCa -3'
miRNA:   3'- gcuCGAUuuuACUUGCUGCCGUG---CCG- -5'
16978 5' -49.3 NC_004323.1 + 16493 0.76 0.775238
Target:  5'- uCGcAGCUGGGAUGAguuguuggAgGACGGCACuaGGCg -3'
miRNA:   3'- -GC-UCGAUUUUACU--------UgCUGCCGUG--CCG- -5'
16978 5' -49.3 NC_004323.1 + 36022 0.83 0.379788
Target:  5'- -aAGCgccccuGUGGACGAUGGCGCGGCg -3'
miRNA:   3'- gcUCGauuu--UACUUGCUGCCGUGCCG- -5'
16978 5' -49.3 NC_004323.1 + 21140 1.13 0.006885
Target:  5'- aCGAGCUAAAAUGAACGACGGCACGGCc -3'
miRNA:   3'- -GCUCGAUUUUACUUGCUGCCGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.