miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16981 3' -49.9 NC_004323.1 + 954 0.68 0.978468
Target:  5'- --aGCGACGGCuACAAGuCGCcGCccGCg -3'
miRNA:   3'- caaCGUUGCUG-UGUUC-GCGcUGuaCG- -5'
16981 3' -49.9 NC_004323.1 + 1124 0.73 0.823217
Target:  5'- -gUGCAGCGcaucaACGCGGGCGgCGACuUGUa -3'
miRNA:   3'- caACGUUGC-----UGUGUUCGC-GCUGuACG- -5'
16981 3' -49.9 NC_004323.1 + 1625 0.72 0.864917
Target:  5'- uGUUGagauGCGACaACGGGCGCauuguuaauucuuGACGUGCg -3'
miRNA:   3'- -CAACgu--UGCUG-UGUUCGCG-------------CUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 4736 0.7 0.937714
Target:  5'- -gUGCAgGCGGgGCAGGCGgGGCuggcgGCg -3'
miRNA:   3'- caACGU-UGCUgUGUUCGCgCUGua---CG- -5'
16981 3' -49.9 NC_004323.1 + 9175 0.66 0.993284
Target:  5'- -gUGCAcaGCGACACGAaCGCaaaAUGCu -3'
miRNA:   3'- caACGU--UGCUGUGUUcGCGcugUACG- -5'
16981 3' -49.9 NC_004323.1 + 14000 0.67 0.988289
Target:  5'- --cGaCGACGACAgAAGCGCauuaaaAUGCa -3'
miRNA:   3'- caaC-GUUGCUGUgUUCGCGcug---UACG- -5'
16981 3' -49.9 NC_004323.1 + 14729 0.67 0.986675
Target:  5'- cUUGCGAaacaguacgGGCGaAAGCGuCGGCGUGCg -3'
miRNA:   3'- cAACGUUg--------CUGUgUUCGC-GCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 16507 0.66 0.994217
Target:  5'- aGUUGUuggagGACGGCACuAGGCGguuCGAaAUGCg -3'
miRNA:   3'- -CAACG-----UUGCUGUG-UUCGC---GCUgUACG- -5'
16981 3' -49.9 NC_004323.1 + 18322 0.66 0.994965
Target:  5'- --aGCGACGAUguggacaACAuGUGCGACAUu- -3'
miRNA:   3'- caaCGUUGCUG-------UGUuCGCGCUGUAcg -5'
16981 3' -49.9 NC_004323.1 + 20204 0.7 0.946912
Target:  5'- uUUGCcg-GAUaagaacaaaacuaGCGAGCGCGACAUGUu -3'
miRNA:   3'- cAACGuugCUG-------------UGUUCGCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 21574 0.68 0.975931
Target:  5'- --gGCc-CGGCGCAuuGCGUGACAUGa -3'
miRNA:   3'- caaCGuuGCUGUGUu-CGCGCUGUACg -5'
16981 3' -49.9 NC_004323.1 + 22044 0.69 0.951804
Target:  5'- -aUGCcgacACGGCAUAAGCaCGGCGUcGCg -3'
miRNA:   3'- caACGu---UGCUGUGUUCGcGCUGUA-CG- -5'
16981 3' -49.9 NC_004323.1 + 26791 0.67 0.984896
Target:  5'- --cGCGuaucGCGGCACA--CGCGACAuaacaUGCa -3'
miRNA:   3'- caaCGU----UGCUGUGUucGCGCUGU-----ACG- -5'
16981 3' -49.9 NC_004323.1 + 30977 0.74 0.775872
Target:  5'- --cGCAcCGACACGGGCGCuGuCGUGUc -3'
miRNA:   3'- caaCGUuGCUGUGUUCGCG-CuGUACG- -5'
16981 3' -49.9 NC_004323.1 + 33878 0.66 0.993284
Target:  5'- --cGCAGCGGC-CGAaaGgGACAUGUu -3'
miRNA:   3'- caaCGUUGCUGuGUUcgCgCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 37960 0.66 0.993284
Target:  5'- aUUGCAuuaaaGACGUggGCGUguuGGCGUGCu -3'
miRNA:   3'- cAACGUug---CUGUGuuCGCG---CUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 38163 0.69 0.966008
Target:  5'- uUUGCAguuuagagccaaugGCGACAUuggcucGGCG-GACGUGCa -3'
miRNA:   3'- cAACGU--------------UGCUGUGu-----UCGCgCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 38369 1.14 0.004507
Target:  5'- aGUUGCAACGACACAAGCGCGACAUGCg -3'
miRNA:   3'- -CAACGUUGCUGUGUUCGCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 40420 0.66 0.991895
Target:  5'- --gGCAACGA-GguGGCGCGaaucaccaacgacaGCAUGCg -3'
miRNA:   3'- caaCGUUGCUgUguUCGCGC--------------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 42553 0.7 0.942674
Target:  5'- --aGCGugGGa--GAGCGCGgACGUGCc -3'
miRNA:   3'- caaCGUugCUgugUUCGCGC-UGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.