Results 41 - 51 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 1625 | 0.72 | 0.864917 |
Target: 5'- uGUUGagauGCGACaACGGGCGCauuguuaauucuuGACGUGCg -3' miRNA: 3'- -CAACgu--UGCUG-UGUUCGCG-------------CUGUACG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 118024 | 0.73 | 0.832141 |
Target: 5'- --cGCAAUGGCGCAGcguGCGCGAUAccGCc -3' miRNA: 3'- caaCGUUGCUGUGUU---CGCGCUGUa-CG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 1124 | 0.73 | 0.823217 |
Target: 5'- -gUGCAGCGcaucaACGCGGGCGgCGACuUGUa -3' miRNA: 3'- caACGUUGC-----UGUGUUCGC-GCUGuACG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 120028 | 0.73 | 0.814098 |
Target: 5'- --gGCGACGGCgGCGAGUugGCGGCAgGCg -3' miRNA: 3'- caaCGUUGCUG-UGUUCG--CGCUGUaCG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 64093 | 0.74 | 0.804795 |
Target: 5'- --aGCuGGCGACGCGAGC-CGGCAaGCa -3' miRNA: 3'- caaCG-UUGCUGUGUUCGcGCUGUaCG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 30977 | 0.74 | 0.775872 |
Target: 5'- --cGCAcCGACACGGGCGCuGuCGUGUc -3' miRNA: 3'- caaCGUuGCUGUGUUCGCG-CuGUACG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 53847 | 0.74 | 0.765929 |
Target: 5'- gGUUGCAucGCgGGCACGGGCGcCGGCG-GCu -3' miRNA: 3'- -CAACGU--UG-CUGUGUUCGC-GCUGUaCG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 120517 | 0.75 | 0.755853 |
Target: 5'- -aUGCGACG-CGCAAGCGa-GCGUGUg -3' miRNA: 3'- caACGUUGCuGUGUUCGCgcUGUACG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 130144 | 0.76 | 0.703854 |
Target: 5'- --gGCAGCGAUcugcgcuccaGCAAuaGCGACGUGCg -3' miRNA: 3'- caaCGUUGCUG----------UGUUcgCGCUGUACG- -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 124731 | 0.81 | 0.441626 |
Target: 5'- aGUUGCAACuuGACACuGGCGCGACAa-- -3' miRNA: 3'- -CAACGUUG--CUGUGuUCGCGCUGUacg -5' |
|||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 38369 | 1.14 | 0.004507 |
Target: 5'- aGUUGCAACGACACAAGCGCGACAUGCg -3' miRNA: 3'- -CAACGUUGCUGUGUUCGCGCUGUACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home