miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16984 5' -50 NC_004323.1 + 57014 0.66 0.995962
Target:  5'- cGAuGGCaaauacugaaugGCGACGAAAUCgaagugUCGCCAGa -3'
miRNA:   3'- aCU-CUG------------UGCUGUUUUAGa-----GGCGGUCg -5'
16984 5' -50 NC_004323.1 + 7915 0.66 0.994476
Target:  5'- uUGAGACAaGACGAAuUCUauGCCAa- -3'
miRNA:   3'- -ACUCUGUgCUGUUUuAGAggCGGUcg -5'
16984 5' -50 NC_004323.1 + 36037 0.66 0.994476
Target:  5'- cGAuGGCGCGGCGcauuugGAAUCgCCG-CGGCa -3'
miRNA:   3'- aCU-CUGUGCUGU------UUUAGaGGCgGUCG- -5'
16984 5' -50 NC_004323.1 + 123958 0.66 0.994476
Target:  5'- aUGAuuGCACGGCGuauuAUCUCUGUCcGCa -3'
miRNA:   3'- -ACUc-UGUGCUGUuu--UAGAGGCGGuCG- -5'
16984 5' -50 NC_004323.1 + 124019 0.66 0.994476
Target:  5'- --cGAauuUGACuuGGaCUCCGCCAGCu -3'
miRNA:   3'- acuCUgu-GCUGuuUUaGAGGCGGUCG- -5'
16984 5' -50 NC_004323.1 + 130803 0.66 0.993582
Target:  5'- --cGugACGACA----CUgCGCCAGCc -3'
miRNA:   3'- acuCugUGCUGUuuuaGAgGCGGUCG- -5'
16984 5' -50 NC_004323.1 + 64588 0.66 0.993582
Target:  5'- aGAGcaACGCGGCcGAGUCcCUGUCgAGCg -3'
miRNA:   3'- aCUC--UGUGCUGuUUUAGaGGCGG-UCG- -5'
16984 5' -50 NC_004323.1 + 64187 0.67 0.99145
Target:  5'- aGAGugGCGuguuugagcaACAGAGUCauguaauugUUgGCCAGCu -3'
miRNA:   3'- aCUCugUGC----------UGUUUUAG---------AGgCGGUCG- -5'
16984 5' -50 NC_004323.1 + 104200 0.67 0.985533
Target:  5'- aGGGACGCGAagauuuCAAAGUUgccauucacgaUCCGUgGGCc -3'
miRNA:   3'- aCUCUGUGCU------GUUUUAG-----------AGGCGgUCG- -5'
16984 5' -50 NC_004323.1 + 16725 0.68 0.974252
Target:  5'- gGGGACAgGACcucuAUgUgUGCCAGCa -3'
miRNA:   3'- aCUCUGUgCUGuuu-UAgAgGCGGUCG- -5'
16984 5' -50 NC_004323.1 + 130134 0.69 0.968299
Target:  5'- aGAGGaaaACGGCAGcGAUCUgCGCUccAGCa -3'
miRNA:   3'- aCUCUg--UGCUGUU-UUAGAgGCGG--UCG- -5'
16984 5' -50 NC_004323.1 + 46899 0.7 0.944741
Target:  5'- gUGAGACGCGACGAAAaaagUCGUguGUu -3'
miRNA:   3'- -ACUCUGUGCUGUUUUaga-GGCGguCG- -5'
16984 5' -50 NC_004323.1 + 122580 0.7 0.934855
Target:  5'- -cGGACcgGCGGCGAA--CUCUGCCGGUa -3'
miRNA:   3'- acUCUG--UGCUGUUUuaGAGGCGGUCG- -5'
16984 5' -50 NC_004323.1 + 97376 0.72 0.89197
Target:  5'- -cAGACugGGCuuGGuucacguuuUCUCCGCUGGCg -3'
miRNA:   3'- acUCUGugCUGuuUU---------AGAGGCGGUCG- -5'
16984 5' -50 NC_004323.1 + 113543 0.77 0.634702
Target:  5'- cGAGGug-GACAAGcugaagcGUCUCCGCCAGCg -3'
miRNA:   3'- aCUCUgugCUGUUU-------UAGAGGCGGUCG- -5'
16984 5' -50 NC_004323.1 + 97191 1.14 0.004627
Target:  5'- uUGAGACACGACAAAAUCUCCGCCAGCg -3'
miRNA:   3'- -ACUCUGUGCUGUUUUAGAGGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.