miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16986 5' -57.6 NC_004323.1 + 23480 0.66 0.773337
Target:  5'- -----uGUAGUACGCGGGCgGgGCGUu -3'
miRNA:   3'- gucuacCAUCGUGCGUCCGaCgCGCA- -5'
16986 5' -57.6 NC_004323.1 + 5008 0.67 0.724521
Target:  5'- gAGGUGGUGGCGguggUGguGGUgGCGCu- -3'
miRNA:   3'- gUCUACCAUCGU----GCguCCGaCGCGca -5'
16986 5' -57.6 NC_004323.1 + 31330 0.68 0.642658
Target:  5'- gAGAUcGGUGGUACaaAGGCgaugugGCGCGUu -3'
miRNA:   3'- gUCUA-CCAUCGUGcgUCCGa-----CGCGCA- -5'
16986 5' -57.6 NC_004323.1 + 53851 0.68 0.663352
Target:  5'- -cGGUGGUuGCAuCGCGGGCacggGCGCc- -3'
miRNA:   3'- guCUACCAuCGU-GCGUCCGa---CGCGca -5'
16986 5' -57.6 NC_004323.1 + 118344 1.07 0.001866
Target:  5'- cCAGAUGGUAGCACGCAGGCUGCGCGUa -3'
miRNA:   3'- -GUCUACCAUCGUGCGUCCGACGCGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.