Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16991 | 3' | -53.7 | NC_004333.2 | + | 24991 | 0.66 | 0.77451 |
Target: 5'- uAUCAcgaUUCCGCAaaacGGCGcacCGACCGacgUGACg -3' miRNA: 3'- -UAGU---AAGGCGU----CUGCa--GCUGGC---ACUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 33803 | 0.66 | 0.77451 |
Target: 5'- gAUCGaugCUGCGGACG-CGAuauuacCCGUGAUg -3' miRNA: 3'- -UAGUaa-GGCGUCUGCaGCU------GGCACUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 44564 | 0.66 | 0.76415 |
Target: 5'- -aCGgcCCGCAGGCGccCGACUG-GGCg -3' miRNA: 3'- uaGUaaGGCGUCUGCa-GCUGGCaCUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 43118 | 0.66 | 0.753647 |
Target: 5'- uUCAgcgCCGCGccGACGUCGGCCa---- -3' miRNA: 3'- uAGUaa-GGCGU--CUGCAGCUGGcacug -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 19219 | 0.67 | 0.68945 |
Target: 5'- -gCGUUCCGCAcGGCGcUCGAgcaauacgggcuggaCGUGACg -3' miRNA: 3'- uaGUAAGGCGU-CUGC-AGCUg--------------GCACUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 37509 | 0.67 | 0.688337 |
Target: 5'- -gCGUgcaCCgGCcGGCG-CGACCGUGACg -3' miRNA: 3'- uaGUAa--GG-CGuCUGCaGCUGGCACUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 8686 | 0.67 | 0.677184 |
Target: 5'- -gCGUUCaGCAcGGCGaacgugcCGACCGUGACg -3' miRNA: 3'- uaGUAAGgCGU-CUGCa------GCUGGCACUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 45845 | 0.68 | 0.654754 |
Target: 5'- gGUCGgugCUGCucGAUGUCGAUCGUGuCg -3' miRNA: 3'- -UAGUaa-GGCGu-CUGCAGCUGGCACuG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 46133 | 0.72 | 0.37829 |
Target: 5'- cUCuaUCgCGCGGGCGUCGacgugaucgaugcgGCCGUGACg -3' miRNA: 3'- uAGuaAG-GCGUCUGCAGC--------------UGGCACUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 16465 | 0.74 | 0.297519 |
Target: 5'- cGUCGagaUUCCGCAGaucGCGUCGAgCGUcGACg -3' miRNA: 3'- -UAGU---AAGGCGUC---UGCAGCUgGCA-CUG- -5' |
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16991 | 3' | -53.7 | NC_004333.2 | + | 47886 | 0.97 | 0.007889 |
Target: 5'- cAUCAUUCCGCAGACGUCG-CCGUGACc -3' miRNA: 3'- -UAGUAAGGCGUCUGCAGCuGGCACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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