Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16993 | 3' | -50.3 | NC_004333.2 | + | 21475 | 0.69 | 0.754132 |
Target: 5'- aUGCCGGCcgAUUGC---CUAUGCGAcucGCGa -3' miRNA: 3'- -ACGGCCG--UAACGuaaGGUACGUU---UGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 12502 | 0.69 | 0.754132 |
Target: 5'- uUGCCGGCAUacggGCcgUCCG-GCu--CGg -3' miRNA: 3'- -ACGGCCGUAa---CGuaAGGUaCGuuuGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 15209 | 0.69 | 0.731985 |
Target: 5'- gGCCGGCA--GCAggCCGguCAGACGg -3' miRNA: 3'- aCGGCCGUaaCGUaaGGUacGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 2673 | 0.69 | 0.731985 |
Target: 5'- cGCCGGCAgcUUGCAgcgUCGcGCcGGCGg -3' miRNA: 3'- aCGGCCGU--AACGUaa-GGUaCGuUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 28534 | 0.69 | 0.720736 |
Target: 5'- cGCCGacGCG-UGCAUUCCcgGCAucgcACGu -3' miRNA: 3'- aCGGC--CGUaACGUAAGGuaCGUu---UGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 35489 | 0.71 | 0.651638 |
Target: 5'- gGCCGGUga-GCGUgCCGccUGCGAGCGg -3' miRNA: 3'- aCGGCCGuaaCGUAaGGU--ACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 18175 | 0.71 | 0.651638 |
Target: 5'- uUGCCGGCGUgccgggugaUGCGcucgUCGUGCGcGCGg -3' miRNA: 3'- -ACGGCCGUA---------ACGUaa--GGUACGUuUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 20323 | 0.71 | 0.651638 |
Target: 5'- uUGCCaGGC-UUGCcggCCGUGCcGACGg -3' miRNA: 3'- -ACGG-CCGuAACGuaaGGUACGuUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 45190 | 0.72 | 0.593367 |
Target: 5'- cGCCGGCGagcgucuacgGCAUUCCGuUGaCGGGCGu -3' miRNA: 3'- aCGGCCGUaa--------CGUAAGGU-AC-GUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 43582 | 0.72 | 0.558755 |
Target: 5'- cUGCCGGCGcgGCcgUUCAUGgaaaAGACGa -3' miRNA: 3'- -ACGGCCGUaaCGuaAGGUACg---UUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 720 | 0.73 | 0.535995 |
Target: 5'- cGCCGGCgcGUUGCuagUCgAUGCGucgAACGg -3' miRNA: 3'- aCGGCCG--UAACGua-AGgUACGU---UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 5215 | 0.73 | 0.491533 |
Target: 5'- cGCCGGCgagggugcggGUUGCAgcgcaUCCcgGCGAGCc -3' miRNA: 3'- aCGGCCG----------UAACGUa----AGGuaCGUUUGc -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 10676 | 0.74 | 0.459335 |
Target: 5'- cGCCGGCcggUGCAcgCUAUGCAcuCGg -3' miRNA: 3'- aCGGCCGua-ACGUaaGGUACGUuuGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 32983 | 0.74 | 0.469946 |
Target: 5'- cUGCCGGCcgUGCGgau--UGCGAACGc -3' miRNA: 3'- -ACGGCCGuaACGUaagguACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 28910 | 0.75 | 0.388902 |
Target: 5'- gGCCGGCGcauacUUGCcgUCgGUGCGuAGCGg -3' miRNA: 3'- aCGGCCGU-----AACGuaAGgUACGU-UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 45520 | 0.8 | 0.199752 |
Target: 5'- cUGCCGGCGUUGCGgcugauacgCCG-GCAAGCGc -3' miRNA: 3'- -ACGGCCGUAACGUaa-------GGUaCGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 16855 | 0.85 | 0.104961 |
Target: 5'- gGCCGGCAUUGCGggcgCCGUGCucGGCGu -3' miRNA: 3'- aCGGCCGUAACGUaa--GGUACGu-UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 47222 | 1.09 | 0.002384 |
Target: 5'- cUGCCGGCAUUGCAUUCCAUGCAAACGc -3' miRNA: 3'- -ACGGCCGUAACGUAAGGUACGUUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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