miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16995 3' -54 NC_004333.2 + 35165 0.66 0.782521
Target:  5'- cGCA--GGCGUUGAugccCGGCGCGaacgucgauUUGUCGa -3'
miRNA:   3'- -CGUacCCGUAGCU----GCCGUGC---------AACAGC- -5'
16995 3' -54 NC_004333.2 + 4946 0.66 0.762141
Target:  5'- gGCGcGGGCAUgCGAacgcaCGGCACGagGUUc -3'
miRNA:   3'- -CGUaCCCGUA-GCU-----GCCGUGCaaCAGc -5'
16995 3' -54 NC_004333.2 + 30707 0.66 0.751742
Target:  5'- aGCGUGaGCG-CGGCGGCcuucGCGUUG-CGc -3'
miRNA:   3'- -CGUACcCGUaGCUGCCG----UGCAACaGC- -5'
16995 3' -54 NC_004333.2 + 32279 0.67 0.73058
Target:  5'- cGgAUGGcGCggGUCGGCGGCGa--UGUCGa -3'
miRNA:   3'- -CgUACC-CG--UAGCUGCCGUgcaACAGC- -5'
16995 3' -54 NC_004333.2 + 4257 0.67 0.73058
Target:  5'- aCAUGGGUAUCGGUGcGCuACGUggcguuugGUCGc -3'
miRNA:   3'- cGUACCCGUAGCUGC-CG-UGCAa-------CAGC- -5'
16995 3' -54 NC_004333.2 + 39747 0.67 0.719842
Target:  5'- ---cGGGCAgaucaacgUCGGCGGCaccguaucggcgACGUUGcUCGa -3'
miRNA:   3'- cguaCCCGU--------AGCUGCCG------------UGCAAC-AGC- -5'
16995 3' -54 NC_004333.2 + 11899 0.67 0.709015
Target:  5'- cGCAUGGcGCAg-GACGuCGCGU-GUCGc -3'
miRNA:   3'- -CGUACC-CGUagCUGCcGUGCAaCAGC- -5'
16995 3' -54 NC_004333.2 + 21885 0.67 0.687141
Target:  5'- gGCuuucGCAUCGACGGCGCGgUG-CGc -3'
miRNA:   3'- -CGuaccCGUAGCUGCCGUGCaACaGC- -5'
16995 3' -54 NC_004333.2 + 34586 0.67 0.676118
Target:  5'- cGCAcuugGGGCGaagcgaUCGGCGGCACGa----- -3'
miRNA:   3'- -CGUa---CCCGU------AGCUGCCGUGCaacagc -5'
16995 3' -54 NC_004333.2 + 29302 0.68 0.653955
Target:  5'- uGCGuucUGGGCGcccCGGCGGCaauGCGUUG-CGc -3'
miRNA:   3'- -CGU---ACCCGUa--GCUGCCG---UGCAACaGC- -5'
16995 3' -54 NC_004333.2 + 28775 0.69 0.57627
Target:  5'- cGCGcGGGUcgCGGCGGCGCGa----- -3'
miRNA:   3'- -CGUaCCCGuaGCUGCCGUGCaacagc -5'
16995 3' -54 NC_004333.2 + 43325 0.69 0.57627
Target:  5'- gGCAUcGGCA-CGGCGcGCGCGUacgGUCa -3'
miRNA:   3'- -CGUAcCCGUaGCUGC-CGUGCAa--CAGc -5'
16995 3' -54 NC_004333.2 + 7117 0.7 0.554361
Target:  5'- aCGUGcGG-AUUGGCGGCGCGaaacgUGUCGa -3'
miRNA:   3'- cGUAC-CCgUAGCUGCCGUGCa----ACAGC- -5'
16995 3' -54 NC_004333.2 + 14588 0.7 0.543497
Target:  5'- aCAUGGGaCAgcggcuUCGGCuGCugGUUGUUGa -3'
miRNA:   3'- cGUACCC-GU------AGCUGcCGugCAACAGC- -5'
16995 3' -54 NC_004333.2 + 45241 0.7 0.500818
Target:  5'- uGCA-GGGCuacaGCGGCACGUUGaCGg -3'
miRNA:   3'- -CGUaCCCGuagcUGCCGUGCAACaGC- -5'
16995 3' -54 NC_004333.2 + 46139 0.71 0.459681
Target:  5'- cGCGcGGGCGUCGacgugaucgauGCGGC-CGUgacGUCGg -3'
miRNA:   3'- -CGUaCCCGUAGC-----------UGCCGuGCAa--CAGC- -5'
16995 3' -54 NC_004333.2 + 7184 0.75 0.278285
Target:  5'- -gGUGGGCuucGUCGACGaGCACGaaGUCGa -3'
miRNA:   3'- cgUACCCG---UAGCUGC-CGUGCaaCAGC- -5'
16995 3' -54 NC_004333.2 + 46601 1.12 0.000768
Target:  5'- aGCAUGGGCAUCGACGGCACGUUGUCGg -3'
miRNA:   3'- -CGUACCCGUAGCUGCCGUGCAACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.