miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16995 5' -54.2 NC_004333.2 + 33862 0.66 0.72493
Target:  5'- -gCGGCGAacGGUGCCGCgc-UGAUCGa -3'
miRNA:   3'- aaGUUGCU--CCACGGCGacuGCUAGUg -5'
16995 5' -54.2 NC_004333.2 + 258 0.66 0.713931
Target:  5'- gUUCGAUGuGGUcgucacGCCGCcGAgcaCGGUCACg -3'
miRNA:   3'- -AAGUUGCuCCA------CGGCGaCU---GCUAGUG- -5'
16995 5' -54.2 NC_004333.2 + 16001 0.66 0.713931
Target:  5'- gUCAACGAGGU-CUGC-GACGA--GCg -3'
miRNA:   3'- aAGUUGCUCCAcGGCGaCUGCUagUG- -5'
16995 5' -54.2 NC_004333.2 + 17411 0.66 0.713931
Target:  5'- -gCAGCGcGGUcacGaCgCGCUGACGAUCAa -3'
miRNA:   3'- aaGUUGCuCCA---C-G-GCGACUGCUAGUg -5'
16995 5' -54.2 NC_004333.2 + 29801 0.66 0.713931
Target:  5'- -gCGACGAcGGUcaccggGCCGUUGAugcUGAUCGCc -3'
miRNA:   3'- aaGUUGCU-CCA------CGGCGACU---GCUAGUG- -5'
16995 5' -54.2 NC_004333.2 + 36055 0.66 0.68047
Target:  5'- -aCGGCGAGcucGUGCCGCUcgguaaguucGACGGguucuuUCACg -3'
miRNA:   3'- aaGUUGCUC---CACGGCGA----------CUGCU------AGUG- -5'
16995 5' -54.2 NC_004333.2 + 18270 0.66 0.68047
Target:  5'- -gCGGcCGAGGaUGCCGCgcgcGGCccGAUCGCg -3'
miRNA:   3'- aaGUU-GCUCC-ACGGCGa---CUG--CUAGUG- -5'
16995 5' -54.2 NC_004333.2 + 10799 0.66 0.669202
Target:  5'- -aCGAUGAGGacgGCCGCgcGACGcggugcacGUCGCg -3'
miRNA:   3'- aaGUUGCUCCa--CGGCGa-CUGC--------UAGUG- -5'
16995 5' -54.2 NC_004333.2 + 1729 0.67 0.646567
Target:  5'- -cCGACGAGcGUGuCCGCUGGuacCGGaCACu -3'
miRNA:   3'- aaGUUGCUC-CAC-GGCGACU---GCUaGUG- -5'
16995 5' -54.2 NC_004333.2 + 35482 0.67 0.623876
Target:  5'- gUCAACGGGccggugagcGUGCCGCcuGCGAgcggCACg -3'
miRNA:   3'- aAGUUGCUC---------CACGGCGacUGCUa---GUG- -5'
16995 5' -54.2 NC_004333.2 + 24737 0.68 0.556306
Target:  5'- aUCGGuCGAGaaGCCGCUcacgaacgcggcGACGAUCGCu -3'
miRNA:   3'- aAGUU-GCUCcaCGGCGA------------CUGCUAGUG- -5'
16995 5' -54.2 NC_004333.2 + 19274 0.68 0.556306
Target:  5'- -cCGGCGAccuGGUGCUGCUcGCGAgcaagCACa -3'
miRNA:   3'- aaGUUGCU---CCACGGCGAcUGCUa----GUG- -5'
16995 5' -54.2 NC_004333.2 + 41730 0.69 0.545218
Target:  5'- aUCAACGAGGagaucGgCGCgGGCGAcUCGCg -3'
miRNA:   3'- aAGUUGCUCCa----CgGCGaCUGCU-AGUG- -5'
16995 5' -54.2 NC_004333.2 + 3547 0.69 0.491006
Target:  5'- aUCAACGcGGUGCCGCgcaGCGcGUCGg -3'
miRNA:   3'- aAGUUGCuCCACGGCGac-UGC-UAGUg -5'
16995 5' -54.2 NC_004333.2 + 12703 0.7 0.459699
Target:  5'- cUCAcCGGcccguugacGGUGCCGacguUGACGGUCACg -3'
miRNA:   3'- aAGUuGCU---------CCACGGCg---ACUGCUAGUG- -5'
16995 5' -54.2 NC_004333.2 + 7449 0.7 0.4495
Target:  5'- gUUCAggaGCGAcuUGCCGCcgccggUGACGAUCGCg -3'
miRNA:   3'- -AAGU---UGCUccACGGCG------ACUGCUAGUG- -5'
16995 5' -54.2 NC_004333.2 + 33293 0.7 0.4495
Target:  5'- -aCGACucGGUGCUGCUGACGcgCcuGCa -3'
miRNA:   3'- aaGUUGcuCCACGGCGACUGCuaG--UG- -5'
16995 5' -54.2 NC_004333.2 + 37061 0.72 0.354989
Target:  5'- -cCGGCGAGGcgauuucgUGCCGCUGuucgucgcgcACGAUCAUu -3'
miRNA:   3'- aaGUUGCUCC--------ACGGCGAC----------UGCUAGUG- -5'
16995 5' -54.2 NC_004333.2 + 15620 0.74 0.28265
Target:  5'- uUUCGGCGAacgucGUGCCGUUGGCGAccucgaUCACg -3'
miRNA:   3'- -AAGUUGCUc----CACGGCGACUGCU------AGUG- -5'
16995 5' -54.2 NC_004333.2 + 46639 1.08 0.00107
Target:  5'- gUUCAACGAGGUGCCGCUGACGAUCACg -3'
miRNA:   3'- -AAGUUGCUCCACGGCGACUGCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.