miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 3' -53.2 NC_004333.2 + 27928 0.66 0.803032
Target:  5'- uCGAUGUGCgGCGCGAUGuAGGC-Ca- -3'
miRNA:   3'- -GCUACAUGaCGUGCUGCcUUCGcGac -5'
16996 3' -53.2 NC_004333.2 + 29888 0.66 0.793133
Target:  5'- gCGAaGcGCUGCGCGAuCGGGccGCGCg- -3'
miRNA:   3'- -GCUaCaUGACGUGCU-GCCUu-CGCGac -5'
16996 3' -53.2 NC_004333.2 + 47809 0.66 0.793133
Target:  5'- uGAUcGUGCaGCGCGccgccuGCGGAcGGCGCUu -3'
miRNA:   3'- gCUA-CAUGaCGUGC------UGCCU-UCGCGAc -5'
16996 3' -53.2 NC_004333.2 + 17874 0.66 0.793133
Target:  5'- uGGUGUcGCagGCGCGACGGcGGCcaGCUc -3'
miRNA:   3'- gCUACA-UGa-CGUGCUGCCuUCG--CGAc -5'
16996 3' -53.2 NC_004333.2 + 3304 0.66 0.772817
Target:  5'- --uUGUGC-GCGCGGCGGc-GCGCg- -3'
miRNA:   3'- gcuACAUGaCGUGCUGCCuuCGCGac -5'
16996 3' -53.2 NC_004333.2 + 41770 0.66 0.772817
Target:  5'- -uAUGgguCUGCACGAgcgaGGAAGUGCg- -3'
miRNA:   3'- gcUACau-GACGUGCUg---CCUUCGCGac -5'
16996 3' -53.2 NC_004333.2 + 46471 0.66 0.762425
Target:  5'- gGAUacGUACUGCGCGACuauuacaaaGGcugcAAGCGCg- -3'
miRNA:   3'- gCUA--CAUGACGUGCUG---------CC----UUCGCGac -5'
16996 3' -53.2 NC_004333.2 + 13356 0.67 0.751893
Target:  5'- aCGGUGUACggGCGCGGCacGAgcGGCGUg- -3'
miRNA:   3'- -GCUACAUGa-CGUGCUGc-CU--UCGCGac -5'
16996 3' -53.2 NC_004333.2 + 34542 0.67 0.751893
Target:  5'- cCGA-GUACcGCGCGAUGcacGAAGUGCUc -3'
miRNA:   3'- -GCUaCAUGaCGUGCUGC---CUUCGCGAc -5'
16996 3' -53.2 NC_004333.2 + 48067 0.67 0.751893
Target:  5'- gCGAUGUcguGCUGCucggugcCGACG-AGGCGCa- -3'
miRNA:   3'- -GCUACA---UGACGu------GCUGCcUUCGCGac -5'
16996 3' -53.2 NC_004333.2 + 27380 0.67 0.741232
Target:  5'- gGAaGUGCccgGCGCGACGGccGUGCc- -3'
miRNA:   3'- gCUaCAUGa--CGUGCUGCCuuCGCGac -5'
16996 3' -53.2 NC_004333.2 + 36338 0.67 0.719577
Target:  5'- gCGAUGUACcgGCGCaaGCuGGAGCGCg- -3'
miRNA:   3'- -GCUACAUGa-CGUGc-UGcCUUCGCGac -5'
16996 3' -53.2 NC_004333.2 + 16673 0.67 0.719577
Target:  5'- cCGGUGcUGCaccGCGCGguGCGGAAGCaccGCUGc -3'
miRNA:   3'- -GCUAC-AUGa--CGUGC--UGCCUUCG---CGAC- -5'
16996 3' -53.2 NC_004333.2 + 44379 0.68 0.686443
Target:  5'- aGGUGcGCUGCuCGGCGGcgcguGCGCg- -3'
miRNA:   3'- gCUACaUGACGuGCUGCCuu---CGCGac -5'
16996 3' -53.2 NC_004333.2 + 8941 0.68 0.66406
Target:  5'- uCGggGUGCggucgagcauUGCAcgcagcucggcCGACGGGAGCGCg- -3'
miRNA:   3'- -GCuaCAUG----------ACGU-----------GCUGCCUUCGCGac -5'
16996 3' -53.2 NC_004333.2 + 42955 0.68 0.649438
Target:  5'- gGAUGcGCUGCAacccgcacccucgcCGGCGGAcgagcgggcGGCGCUc -3'
miRNA:   3'- gCUACaUGACGU--------------GCUGCCU---------UCGCGAc -5'
16996 3' -53.2 NC_004333.2 + 770 0.69 0.630279
Target:  5'- gCGAUGUAgcugcgauugcUUGCGCGuCGGucGGCGCUu -3'
miRNA:   3'- -GCUACAU-----------GACGUGCuGCCu-UCGCGAc -5'
16996 3' -53.2 NC_004333.2 + 37797 0.7 0.563027
Target:  5'- gGAUGcgaaGCgGCGCGAUGcGAAGCGCg- -3'
miRNA:   3'- gCUACa---UGaCGUGCUGC-CUUCGCGac -5'
16996 3' -53.2 NC_004333.2 + 1658 0.71 0.519233
Target:  5'- -aAUGcGCUGCGCGGuCGGAaacAGCGCUu -3'
miRNA:   3'- gcUACaUGACGUGCU-GCCU---UCGCGAc -5'
16996 3' -53.2 NC_004333.2 + 5517 0.73 0.38842
Target:  5'- gCGcUGUugcggGCUGCuCGACGGGAGaCGCUGc -3'
miRNA:   3'- -GCuACA-----UGACGuGCUGCCUUC-GCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.