miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 24038 0.7 0.208381
Target:  5'- -cUCGugAAGGCGGCCgcgaacauUGCG-CGCUGc -3'
miRNA:   3'- uuAGCugUUCCGCCGG--------GCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 34233 0.7 0.2133
Target:  5'- aAGUCGcCAAGGCGGCCacgcugGCGgcagcggccacgaUCGCCa -3'
miRNA:   3'- -UUAGCuGUUCCGCCGGg-----CGC-------------AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 34337 0.7 0.231013
Target:  5'- -cUCGACGcGGC-GCCCGUcgucgaaccGUCGCCGu -3'
miRNA:   3'- uuAGCUGUuCCGcCGGGCG---------CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 33174 0.7 0.225167
Target:  5'- cGUCGGCGucGGCGGCCCGCuaa-CCGg -3'
miRNA:   3'- uUAGCUGUu-CCGCCGGGCGcagcGGC- -5'
16997 5' -60.5 NC_004333.2 + 38365 0.71 0.186212
Target:  5'- uGAUCGACGcgcugucgcgugucGGGUGcGCCgGCGUgaCGCCGg -3'
miRNA:   3'- -UUAGCUGU--------------UCCGC-CGGgCGCA--GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 27415 0.73 0.143715
Target:  5'- uGUCGACGuucAGGCGcGCagCCGCGUCGgCGa -3'
miRNA:   3'- uUAGCUGU---UCCGC-CG--GGCGCAGCgGC- -5'
16997 5' -60.5 NC_004333.2 + 16882 0.73 0.143715
Target:  5'- cGUCGGCGcaGGuGCGGCCgGUcUCGCCGg -3'
miRNA:   3'- uUAGCUGU--UC-CGCCGGgCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 41740 0.73 0.128918
Target:  5'- aGAUCGGCGcGGGCGaCUCGCG-CGCCGg -3'
miRNA:   3'- -UUAGCUGU-UCCGCcGGGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 32161 0.75 0.09259
Target:  5'- uGUCGGCAGGcCGGCCaCGCGcuuacUCGCCGa -3'
miRNA:   3'- uUAGCUGUUCcGCCGG-GCGC-----AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 4786 0.84 0.019256
Target:  5'- -uUCGGCAGGGUGaGCCCGCGUCGCg- -3'
miRNA:   3'- uuAGCUGUUCCGC-CGGGCGCAGCGgc -5'
16997 5' -60.5 NC_004333.2 + 46224 1.07 0.000386
Target:  5'- aAAUCGACAAGGCGGCCCGCGUCGCCGg -3'
miRNA:   3'- -UUAGCUGUUCCGCCGGGCGCAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.