Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16997 | 5' | -60.5 | NC_004333.2 | + | 2573 | 0.66 | 0.401468 |
Target: 5'- cGAUCGGCAaucacggccguccAGGCGGUCgUGaagGUCGCCc -3' miRNA: 3'- -UUAGCUGU-------------UCCGCCGG-GCg--CAGCGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 12464 | 0.66 | 0.384627 |
Target: 5'- cGUCGGCc-GGCacGCCCGgGUCGUCa -3' miRNA: 3'- uUAGCUGuuCCGc-CGGGCgCAGCGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 19425 | 0.66 | 0.41143 |
Target: 5'- cGGUCGACGcGGC-GCUCGCGcagUUGCUGg -3' miRNA: 3'- -UUAGCUGUuCCGcCGGGCGC---AGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 17024 | 0.66 | 0.384627 |
Target: 5'- --gCGAugcCAAGGCGGgCgGCGaugcauUCGCCGg -3' miRNA: 3'- uuaGCU---GUUCCGCCgGgCGC------AGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 44552 | 0.66 | 0.393432 |
Target: 5'- aGGUCGACugcuaCGGCCCGCaggCGCCc -3' miRNA: 3'- -UUAGCUGuucc-GCCGGGCGca-GCGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 33758 | 0.66 | 0.393432 |
Target: 5'- uGAUCGACu-GGCGGCgCGagaaacUCGCCu -3' miRNA: 3'- -UUAGCUGuuCCGCCGgGCgc----AGCGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 8974 | 0.66 | 0.393432 |
Target: 5'- --cCGACGGGagcGCGGgCCGUGcUGCCGg -3' miRNA: 3'- uuaGCUGUUC---CGCCgGGCGCaGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 23927 | 0.66 | 0.384627 |
Target: 5'- -uUCGAC-GGGCGGCacaCCGUGgaaGCCu -3' miRNA: 3'- uuAGCUGuUCCGCCG---GGCGCag-CGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 5187 | 0.66 | 0.384627 |
Target: 5'- cAUCGGuCGAGaGCGccGCCCGCucGUcCGCCGg -3' miRNA: 3'- uUAGCU-GUUC-CGC--CGGGCG--CA-GCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 9740 | 0.66 | 0.420619 |
Target: 5'- gGAUCGACAAaguucgacGCGGCaaGCGucucgaUCGCCGu -3' miRNA: 3'- -UUAGCUGUUc-------CGCCGggCGC------AGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 9015 | 0.66 | 0.420619 |
Target: 5'- --gCGGCuugccAGGCGGCgCGC-UCGCUGc -3' miRNA: 3'- uuaGCUGu----UCCGCCGgGCGcAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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