miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 44956 0.67 0.3426
Target:  5'- --cCGGCGucaucgGGGCGGgCgGCG-CGCCGg -3'
miRNA:   3'- uuaGCUGU------UCCGCCgGgCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 45970 0.67 0.334602
Target:  5'- --gCGGCGAGGCguggugucccGGCCUGCcacucggCGCCGa -3'
miRNA:   3'- uuaGCUGUUCCG----------CCGGGCGca-----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 19194 0.67 0.334602
Target:  5'- --cCGACccGGCGGCCgCGCaacugaUCGCCGc -3'
miRNA:   3'- uuaGCUGuuCCGCCGG-GCGc-----AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 169 0.68 0.319019
Target:  5'- cGAUCGGCGccuGGCGcgaguccacuGCCCGUGcgccCGCCGg -3'
miRNA:   3'- -UUAGCUGUu--CCGC----------CGGGCGCa---GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 15636 0.68 0.319019
Target:  5'- uGAUCGACGcGaGCGcGCCgCGCGaCGUCGg -3'
miRNA:   3'- -UUAGCUGUuC-CGC-CGG-GCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 36294 0.68 0.311434
Target:  5'- --aCGACAAGGUGcucgcGCCCGUuUCgGCCGa -3'
miRNA:   3'- uuaGCUGUUCCGC-----CGGGCGcAG-CGGC- -5'
16997 5' -60.5 NC_004333.2 + 6557 0.68 0.299585
Target:  5'- cAGUUGAUAGcGGCGcgcguacgcgcgaaaGCCCGCaUCGCCGc -3'
miRNA:   3'- -UUAGCUGUU-CCGC---------------CGGGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 14312 0.68 0.296678
Target:  5'- uGUCGAUcAGcGCGGCaCCGU-UCGCCGc -3'
miRNA:   3'- uUAGCUGuUC-CGCCG-GGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 10799 0.68 0.289506
Target:  5'- --aCGAUGAGGaCGGCCgCGCGaCGCgGu -3'
miRNA:   3'- uuaGCUGUUCC-GCCGG-GCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 18475 0.68 0.289506
Target:  5'- --cCGGCAccggAGGCGuaCCCGcCGUUGCCGg -3'
miRNA:   3'- uuaGCUGU----UCCGCc-GGGC-GCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 48088 0.68 0.28738
Target:  5'- --cCGACGAGGCgcaggcggcaaccgGGCgCGCGcaccgCGCCGg -3'
miRNA:   3'- uuaGCUGUUCCG--------------CCGgGCGCa----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 7840 0.68 0.28247
Target:  5'- aGAUCGAC---GCGGCCUGCGcCgGCCa -3'
miRNA:   3'- -UUAGCUGuucCGCCGGGCGCaG-CGGc -5'
16997 5' -60.5 NC_004333.2 + 28236 0.68 0.280386
Target:  5'- -cUCGAC--GGCGGCUCGCcgcccggcgcgcucGUCGUCGa -3'
miRNA:   3'- uuAGCUGuuCCGCCGGGCG--------------CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 2373 0.68 0.280386
Target:  5'- uGAUCGACGcGGCGuagcccaugacggcGCCgGCGgUCGCCu -3'
miRNA:   3'- -UUAGCUGUuCCGC--------------CGGgCGC-AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 39667 0.69 0.275571
Target:  5'- cGGUCGcCGAGGCGGCgCGCuuccugGUCgGCCu -3'
miRNA:   3'- -UUAGCuGUUCCGCCGgGCG------CAG-CGGc -5'
16997 5' -60.5 NC_004333.2 + 10259 0.69 0.268807
Target:  5'- --aCGACGcAGGCaGUuuGgCGUCGCCGa -3'
miRNA:   3'- uuaGCUGU-UCCGcCGggC-GCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 16006 0.69 0.262178
Target:  5'- -cUCGGCGAguaagcgcguGGcCGGCCUGCcgacaGUCGCCGc -3'
miRNA:   3'- uuAGCUGUU----------CC-GCCGGGCG-----CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 21723 0.69 0.243087
Target:  5'- cGAUCcACAAGGCGGCCagGuCGgcaCGCCGc -3'
miRNA:   3'- -UUAGcUGUUCCGCCGGg-C-GCa--GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 34337 0.7 0.231013
Target:  5'- -cUCGACGcGGC-GCCCGUcgucgaaccGUCGCCGu -3'
miRNA:   3'- uuAGCUGUuCCGcCGGGCG---------CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 33174 0.7 0.225167
Target:  5'- cGUCGGCGucGGCGGCCCGCuaa-CCGg -3'
miRNA:   3'- uUAGCUGUu-CCGCCGGGCGcagcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.