Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16998 | 3' | -53.6 | NC_004333.2 | + | 45899 | 0.71 | 0.482775 |
Target: 5'- aCGAGGCGcucucgagGUGCUugccgagcuggcCGCGUugcgcgagaaGCAGCUCGUc -3' miRNA: 3'- -GCUCCGC--------UACGA------------GCGCA----------UGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 41734 | 0.72 | 0.452241 |
Target: 5'- aCGAGGaGAUcggCGCGgGCGACUCGCg -3' miRNA: 3'- -GCUCCgCUAcgaGCGCaUGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 32294 | 0.72 | 0.432482 |
Target: 5'- aCGAuGGCGGUcacggcggcucGCUCGCGg---GCUCGCa -3' miRNA: 3'- -GCU-CCGCUA-----------CGAGCGCauguUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 37541 | 0.72 | 0.422793 |
Target: 5'- cCGGuGCGcUGCUCGUGcguCAGCUCGCc -3' miRNA: 3'- -GCUcCGCuACGAGCGCau-GUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 38254 | 0.74 | 0.358793 |
Target: 5'- gCGcGGCGAccUGCUCGUGUGgGACggucaCGCg -3' miRNA: 3'- -GCuCCGCU--ACGAGCGCAUgUUGa----GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 17037 | 0.74 | 0.358793 |
Target: 5'- gGGcGGCGAUgcauucgccggGCUCGCGcgcgagcaGCAACUCGCg -3' miRNA: 3'- gCU-CCGCUA-----------CGAGCGCa-------UGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 9501 | 0.74 | 0.350221 |
Target: 5'- gCGcGGCGGccagcUGCUCGacgaaGUACGACUUGCc -3' miRNA: 3'- -GCuCCGCU-----ACGAGCg----CAUGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 6822 | 0.74 | 0.350221 |
Target: 5'- -cGGGCGcGUGCUCGagcgccacaCGUACAcACUCGCg -3' miRNA: 3'- gcUCCGC-UACGAGC---------GCAUGU-UGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 42040 | 0.8 | 0.142451 |
Target: 5'- gCGGGGCG-UGCUCGCcgaaaGCGACUCGUa -3' miRNA: 3'- -GCUCCGCuACGAGCGca---UGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 46077 | 1.12 | 0.000884 |
Target: 5'- uCGAGGCGAUGCUCGCGUACAACUCGCu -3' miRNA: 3'- -GCUCCGCUACGAGCGCAUGUUGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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