Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16998 | 3' | -53.6 | NC_004333.2 | + | 19632 | 0.67 | 0.701643 |
Target: 5'- gCGAGcGCGGccgacGCUgGcCGUcaACAGCUCGCc -3' miRNA: 3'- -GCUC-CGCUa----CGAgC-GCA--UGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 20207 | 0.68 | 0.657417 |
Target: 5'- -uGGGCGcgGCUCGCGcuuucgugGCGGCgaucgacCGCg -3' miRNA: 3'- gcUCCGCuaCGAGCGCa-------UGUUGa------GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 21629 | 0.67 | 0.73412 |
Target: 5'- aGAccGGCGcggGCUC-CGUGCAGUUCGCc -3' miRNA: 3'- gCU--CCGCua-CGAGcGCAUGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 24592 | 0.67 | 0.744752 |
Target: 5'- gGuGGaUGAUGCUCgGCG-GCGGCUuCGCu -3' miRNA: 3'- gCuCC-GCUACGAG-CGCaUGUUGA-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 27544 | 0.66 | 0.755266 |
Target: 5'- cCGuuGCGAcGCUCGCGUcgaauuggccCGACUgCGCg -3' miRNA: 3'- -GCucCGCUaCGAGCGCAu---------GUUGA-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 28738 | 0.68 | 0.668538 |
Target: 5'- gGAGGCGcugGCacgCGCGUG-AACgUCGCg -3' miRNA: 3'- gCUCCGCua-CGa--GCGCAUgUUG-AGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 29980 | 0.68 | 0.679623 |
Target: 5'- ---uGCGAUGCcgCGCGcACGACgagCGCa -3' miRNA: 3'- gcucCGCUACGa-GCGCaUGUUGa--GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 32205 | 0.66 | 0.785985 |
Target: 5'- aCGAGcGCGAUGagcacgUCGCcgagcgucUugAGCUCGCg -3' miRNA: 3'- -GCUC-CGCUACg-----AGCGc-------AugUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 32294 | 0.72 | 0.432482 |
Target: 5'- aCGAuGGCGGUcacggcggcucGCUCGCGg---GCUCGCa -3' miRNA: 3'- -GCU-CCGCUA-----------CGAGCGCauguUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 32394 | 0.66 | 0.805662 |
Target: 5'- uCGGGGUucucGGUGUcggcccgcgccUCGC--GCAGCUCGCu -3' miRNA: 3'- -GCUCCG----CUACG-----------AGCGcaUGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 33396 | 0.71 | 0.472483 |
Target: 5'- aGAacGGCGAUGCcUGCGgcgcaGCGACUgCGCg -3' miRNA: 3'- gCU--CCGCUACGaGCGCa----UGUUGA-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 35408 | 0.66 | 0.785985 |
Target: 5'- gCGaAGGCGAgaUUCGCGUcugguACGACUaCGUg -3' miRNA: 3'- -GC-UCCGCUacGAGCGCA-----UGUUGA-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 36052 | 0.66 | 0.775894 |
Target: 5'- aCGAcGGCGA-GCUCGU--GCcGCUCGg -3' miRNA: 3'- -GCU-CCGCUaCGAGCGcaUGuUGAGCg -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 37322 | 0.66 | 0.755266 |
Target: 5'- uCGcGGCGGUGCUCGaCGcGCucgaaucuGCgUCGCc -3' miRNA: 3'- -GCuCCGCUACGAGC-GCaUGu-------UG-AGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 37541 | 0.72 | 0.422793 |
Target: 5'- cCGGuGCGcUGCUCGUGcguCAGCUCGCc -3' miRNA: 3'- -GCUcCGCuACGAGCGCau-GUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 38254 | 0.74 | 0.358793 |
Target: 5'- gCGcGGCGAccUGCUCGUGUGgGACggucaCGCg -3' miRNA: 3'- -GCuCCGCU--ACGAGCGCAUgUUGa----GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 39110 | 0.66 | 0.795911 |
Target: 5'- gCGAGGCGcucacGCagaUCgGCGUcgACGugUCGCa -3' miRNA: 3'- -GCUCCGCua---CG---AG-CGCA--UGUugAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 40008 | 0.66 | 0.785985 |
Target: 5'- uGAGuacGCGAUGgaCGCGgcCGACcugUCGCc -3' miRNA: 3'- gCUC---CGCUACgaGCGCauGUUG---AGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 40868 | 0.71 | 0.482775 |
Target: 5'- --cGGCGAUGgUCGC--GCGACUCGg -3' miRNA: 3'- gcuCCGCUACgAGCGcaUGUUGAGCg -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 41305 | 0.67 | 0.712554 |
Target: 5'- aCGAGGcCGA-GCUCGCc--CGGCgCGCg -3' miRNA: 3'- -GCUCC-GCUaCGAGCGcauGUUGaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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