miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16998 3' -53.6 NC_004333.2 + 32394 0.66 0.805662
Target:  5'- uCGGGGUucucGGUGUcggcccgcgccUCGC--GCAGCUCGCu -3'
miRNA:   3'- -GCUCCG----CUACG-----------AGCGcaUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 32294 0.72 0.432482
Target:  5'- aCGAuGGCGGUcacggcggcucGCUCGCGg---GCUCGCa -3'
miRNA:   3'- -GCU-CCGCUA-----------CGAGCGCauguUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 32205 0.66 0.785985
Target:  5'- aCGAGcGCGAUGagcacgUCGCcgagcgucUugAGCUCGCg -3'
miRNA:   3'- -GCUC-CGCUACg-----AGCGc-------AugUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 29980 0.68 0.679623
Target:  5'- ---uGCGAUGCcgCGCGcACGACgagCGCa -3'
miRNA:   3'- gcucCGCUACGa-GCGCaUGUUGa--GCG- -5'
16998 3' -53.6 NC_004333.2 + 28738 0.68 0.668538
Target:  5'- gGAGGCGcugGCacgCGCGUG-AACgUCGCg -3'
miRNA:   3'- gCUCCGCua-CGa--GCGCAUgUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 27544 0.66 0.755266
Target:  5'- cCGuuGCGAcGCUCGCGUcgaauuggccCGACUgCGCg -3'
miRNA:   3'- -GCucCGCUaCGAGCGCAu---------GUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 24592 0.67 0.744752
Target:  5'- gGuGGaUGAUGCUCgGCG-GCGGCUuCGCu -3'
miRNA:   3'- gCuCC-GCUACGAG-CGCaUGUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 21629 0.67 0.73412
Target:  5'- aGAccGGCGcggGCUC-CGUGCAGUUCGCc -3'
miRNA:   3'- gCU--CCGCua-CGAGcGCAUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 20207 0.68 0.657417
Target:  5'- -uGGGCGcgGCUCGCGcuuucgugGCGGCgaucgacCGCg -3'
miRNA:   3'- gcUCCGCuaCGAGCGCa-------UGUUGa------GCG- -5'
16998 3' -53.6 NC_004333.2 + 19632 0.67 0.701643
Target:  5'- gCGAGcGCGGccgacGCUgGcCGUcaACAGCUCGCc -3'
miRNA:   3'- -GCUC-CGCUa----CGAgC-GCA--UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 19510 0.66 0.795911
Target:  5'- --uGGCGgcGCUCGUGgccguauggGCAAUcguUCGCa -3'
miRNA:   3'- gcuCCGCuaCGAGCGCa--------UGUUG---AGCG- -5'
16998 3' -53.6 NC_004333.2 + 19143 0.68 0.646273
Target:  5'- gCGGcGCGGUGCUCGCGcugguuaucgUGCuAGC-CGCg -3'
miRNA:   3'- -GCUcCGCUACGAGCGC----------AUG-UUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 18808 0.66 0.764618
Target:  5'- -cGGGCGAcgagccGCUugaagugCGCGUGCGACagCGCa -3'
miRNA:   3'- gcUCCGCUa-----CGA-------GCGCAUGUUGa-GCG- -5'
16998 3' -53.6 NC_004333.2 + 18187 0.68 0.646273
Target:  5'- -cGGGUGAUGCgcucgucgUGCGcGCGGCaUCGCa -3'
miRNA:   3'- gcUCCGCUACGa-------GCGCaUGUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 17051 0.68 0.679623
Target:  5'- --uGGCGucAUGCUCGCGguguucCAGC-CGCg -3'
miRNA:   3'- gcuCCGC--UACGAGCGCau----GUUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 17037 0.74 0.358793
Target:  5'- gGGcGGCGAUgcauucgccggGCUCGCGcgcgagcaGCAACUCGCg -3'
miRNA:   3'- gCU-CCGCUA-----------CGAGCGCa-------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 16160 0.67 0.744752
Target:  5'- uGGGGCGA-GUUCGaugucaaGUACGAgUaCGCg -3'
miRNA:   3'- gCUCCGCUaCGAGCg------CAUGUUgA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 13749 0.66 0.805662
Target:  5'- uCGAGcGCGuaggacGC-CGCGcGCcGCUCGCg -3'
miRNA:   3'- -GCUC-CGCua----CGaGCGCaUGuUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 11855 0.67 0.73412
Target:  5'- cCGuAGGCGAUGCgaCGCccgGCGACUacucgggcggCGCg -3'
miRNA:   3'- -GC-UCCGCUACGa-GCGca-UGUUGA----------GCG- -5'
16998 3' -53.6 NC_004333.2 + 11514 0.68 0.668538
Target:  5'- aCGAGGCGcUGCgaagGCGU-CAugUCGa -3'
miRNA:   3'- -GCUCCGCuACGag--CGCAuGUugAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.