miRNA display CGI


Results 41 - 50 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16998 3' -53.6 NC_004333.2 + 9860 0.68 0.646273
Target:  5'- uCGAGGCGcauuucgccgGUcGC-CGCGUGCAcGgUCGCg -3'
miRNA:   3'- -GCUCCGC----------UA-CGaGCGCAUGU-UgAGCG- -5'
16998 3' -53.6 NC_004333.2 + 9501 0.74 0.350221
Target:  5'- gCGcGGCGGccagcUGCUCGacgaaGUACGACUUGCc -3'
miRNA:   3'- -GCuCCGCU-----ACGAGCg----CAUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 9246 0.67 0.700547
Target:  5'- gGGGGCGccucGC-CGCGUGCGGCauagccuUCGUg -3'
miRNA:   3'- gCUCCGCua--CGaGCGCAUGUUG-------AGCG- -5'
16998 3' -53.6 NC_004333.2 + 7425 0.66 0.785985
Target:  5'- ---cGCGAUGCgcucgaucagcaUCGCGUucaggaGCGACUUGCc -3'
miRNA:   3'- gcucCGCUACG------------AGCGCA------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 6822 0.74 0.350221
Target:  5'- -cGGGCGcGUGCUCGagcgccacaCGUACAcACUCGCg -3'
miRNA:   3'- gcUCCGC-UACGAGC---------GCAUGU-UGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 5145 0.67 0.723384
Target:  5'- -cGGGCGAgccGCcCGUGUugucgagcagcGCAGCUUGCg -3'
miRNA:   3'- gcUCCGCUa--CGaGCGCA-----------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 4607 0.66 0.775894
Target:  5'- uCGAGGCGA-GCgCGCGacacgccauuaaUGCGAUcaggCGCg -3'
miRNA:   3'- -GCUCCGCUaCGaGCGC------------AUGUUGa---GCG- -5'
16998 3' -53.6 NC_004333.2 + 4575 0.69 0.623955
Target:  5'- cCGGGuaGCGAuucuUGCUCGCGc---ACUCGCg -3'
miRNA:   3'- -GCUC--CGCU----ACGAGCGCauguUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 2859 0.7 0.546566
Target:  5'- gCGuuGCGgcGUUCGCGaACGACgUCGCa -3'
miRNA:   3'- -GCucCGCuaCGAGCGCaUGUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 1255 0.7 0.540051
Target:  5'- gCGAGGCuucgcGgcGCUCGCGgcgcUGCAgcaugaacagcaggcGCUCGCg -3'
miRNA:   3'- -GCUCCG-----CuaCGAGCGC----AUGU---------------UGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.