miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16998 3' -53.6 NC_004333.2 + 5145 0.67 0.723384
Target:  5'- -cGGGCGAgccGCcCGUGUugucgagcagcGCAGCUUGCg -3'
miRNA:   3'- gcUCCGCUa--CGaGCGCA-----------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 41305 0.67 0.712554
Target:  5'- aCGAGGcCGA-GCUCGCc--CGGCgCGCg -3'
miRNA:   3'- -GCUCC-GCUaCGAGCGcauGUUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 42081 0.67 0.712554
Target:  5'- aCGAGGauaGcgucGUGCUgCGCGacgagGCGugUCGCg -3'
miRNA:   3'- -GCUCCg--C----UACGA-GCGCa----UGUugAGCG- -5'
16998 3' -53.6 NC_004333.2 + 19632 0.67 0.701643
Target:  5'- gCGAGcGCGGccgacGCUgGcCGUcaACAGCUCGCc -3'
miRNA:   3'- -GCUC-CGCUa----CGAgC-GCA--UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 9246 0.67 0.700547
Target:  5'- gGGGGCGccucGC-CGCGUGCGGCauagccuUCGUg -3'
miRNA:   3'- gCUCCGCua--CGaGCGCAUGUUG-------AGCG- -5'
16998 3' -53.6 NC_004333.2 + 29980 0.68 0.679623
Target:  5'- ---uGCGAUGCcgCGCGcACGACgagCGCa -3'
miRNA:   3'- gcucCGCUACGa-GCGCaUGUUGa--GCG- -5'
16998 3' -53.6 NC_004333.2 + 17051 0.68 0.679623
Target:  5'- --uGGCGucAUGCUCGCGguguucCAGC-CGCg -3'
miRNA:   3'- gcuCCGC--UACGAGCGCau----GUUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 11514 0.68 0.668538
Target:  5'- aCGAGGCGcUGCgaagGCGU-CAugUCGa -3'
miRNA:   3'- -GCUCCGCuACGag--CGCAuGUugAGCg -5'
16998 3' -53.6 NC_004333.2 + 28738 0.68 0.668538
Target:  5'- gGAGGCGcugGCacgCGCGUG-AACgUCGCg -3'
miRNA:   3'- gCUCCGCua-CGa--GCGCAUgUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 20207 0.68 0.657417
Target:  5'- -uGGGCGcgGCUCGCGcuuucgugGCGGCgaucgacCGCg -3'
miRNA:   3'- gcUCCGCuaCGAGCGCa-------UGUUGa------GCG- -5'
16998 3' -53.6 NC_004333.2 + 18187 0.68 0.646273
Target:  5'- -cGGGUGAUGCgcucgucgUGCGcGCGGCaUCGCa -3'
miRNA:   3'- gcUCCGCUACGa-------GCGCaUGUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 9860 0.68 0.646273
Target:  5'- uCGAGGCGcauuucgccgGUcGC-CGCGUGCAcGgUCGCg -3'
miRNA:   3'- -GCUCCGC----------UA-CGaGCGCAUGU-UgAGCG- -5'
16998 3' -53.6 NC_004333.2 + 19143 0.68 0.646273
Target:  5'- gCGGcGCGGUGCUCGCGcugguuaucgUGCuAGC-CGCg -3'
miRNA:   3'- -GCUcCGCUACGAGCGC----------AUG-UUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 4575 0.69 0.623955
Target:  5'- cCGGGuaGCGAuucuUGCUCGCGc---ACUCGCg -3'
miRNA:   3'- -GCUC--CGCU----ACGAGCGCauguUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 2859 0.7 0.546566
Target:  5'- gCGuuGCGgcGUUCGCGaACGACgUCGCa -3'
miRNA:   3'- -GCucCGCuaCGAGCGCaUGUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 1255 0.7 0.540051
Target:  5'- gCGAGGCuucgcGgcGCUCGCGgcgcUGCAgcaugaacagcaggcGCUCGCg -3'
miRNA:   3'- -GCUCCG-----CuaCGAGCGC----AUGU---------------UGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 41599 0.7 0.524953
Target:  5'- uGGcGGCGAUGCgggcuuucgCGCGUACGcgcGC-CGCu -3'
miRNA:   3'- gCU-CCGCUACGa--------GCGCAUGU---UGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 42309 0.71 0.514268
Target:  5'- cCGAGGCGua--UCGCGUGCuguuGCagCGCg -3'
miRNA:   3'- -GCUCCGCuacgAGCGCAUGu---UGa-GCG- -5'
16998 3' -53.6 NC_004333.2 + 40868 0.71 0.482775
Target:  5'- --cGGCGAUGgUCGC--GCGACUCGg -3'
miRNA:   3'- gcuCCGCUACgAGCGcaUGUUGAGCg -5'
16998 3' -53.6 NC_004333.2 + 45899 0.71 0.482775
Target:  5'- aCGAGGCGcucucgagGUGCUugccgagcuggcCGCGUugcgcgagaaGCAGCUCGUc -3'
miRNA:   3'- -GCUCCGC--------UACGA------------GCGCA----------UGUUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.