miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16998 5' -54.4 NC_004333.2 + 21549 0.65 0.776529
Target:  5'- cGGCGGUgcgacaacgaucaACGCCGccaGCUUUGUCGUGa -3'
miRNA:   3'- cCUGCCAa------------UGUGGCc--CGAGAUAGCGC- -5'
16998 5' -54.4 NC_004333.2 + 2948 0.66 0.774515
Target:  5'- cGGACaGGUcgGCaccgacaagcacgugGCCGGGCUUcguggCGCGg -3'
miRNA:   3'- -CCUG-CCAa-UG---------------UGGCCCGAGaua--GCGC- -5'
16998 5' -54.4 NC_004333.2 + 35781 0.66 0.770471
Target:  5'- aGGCGGcgacacuggcGCGCCGGGCgggg-CGCGg -3'
miRNA:   3'- cCUGCCaa--------UGUGGCCCGagauaGCGC- -5'
16998 5' -54.4 NC_004333.2 + 41749 0.66 0.749919
Target:  5'- cGGGCGacucgcGCGCCGGGCUauggGUCuGCa -3'
miRNA:   3'- -CCUGCcaa---UGUGGCCCGAga--UAG-CGc -5'
16998 5' -54.4 NC_004333.2 + 44967 0.67 0.718216
Target:  5'- gGGGCGGgcggcGCGCCGGGCcggCUcaccggccUCGUGc -3'
miRNA:   3'- -CCUGCCaa---UGUGGCCCGa--GAu-------AGCGC- -5'
16998 5' -54.4 NC_004333.2 + 8304 0.68 0.663814
Target:  5'- aGGCGGc-GCGCgGGGCUCg--CGCc -3'
miRNA:   3'- cCUGCCaaUGUGgCCCGAGauaGCGc -5'
16998 5' -54.4 NC_004333.2 + 39539 0.68 0.630725
Target:  5'- cGGGCGcc-GCGCCGaGCUCgacGUCGCGc -3'
miRNA:   3'- -CCUGCcaaUGUGGCcCGAGa--UAGCGC- -5'
16998 5' -54.4 NC_004333.2 + 31631 0.68 0.619685
Target:  5'- uGACGG--ACGCCGGGCa--GUUGCGc -3'
miRNA:   3'- cCUGCCaaUGUGGCCCGagaUAGCGC- -5'
16998 5' -54.4 NC_004333.2 + 29805 0.68 0.619685
Target:  5'- cGACGGU--CACCGGGCcguugaugCUgAUCGCc -3'
miRNA:   3'- cCUGCCAauGUGGCCCGa-------GA-UAGCGc -5'
16998 5' -54.4 NC_004333.2 + 32298 0.69 0.586667
Target:  5'- uGGCGGU--CACgGcGGCUCgcUCGCGg -3'
miRNA:   3'- cCUGCCAauGUGgC-CCGAGauAGCGC- -5'
16998 5' -54.4 NC_004333.2 + 2796 0.69 0.575725
Target:  5'- -aGCGGUUGCGCaGGGCaUCguaCGCGa -3'
miRNA:   3'- ccUGCCAAUGUGgCCCG-AGauaGCGC- -5'
16998 5' -54.4 NC_004333.2 + 15708 0.69 0.553991
Target:  5'- --cCGGUUACauGCUGcGGCUC-GUCGCGg -3'
miRNA:   3'- ccuGCCAAUG--UGGC-CCGAGaUAGCGC- -5'
16998 5' -54.4 NC_004333.2 + 41585 0.7 0.520817
Target:  5'- uGGGCGGc-GCGCCguggcggcgaugcGGGCUUUcgCGCGu -3'
miRNA:   3'- -CCUGCCaaUGUGG-------------CCCGAGAuaGCGC- -5'
16998 5' -54.4 NC_004333.2 + 38431 0.7 0.490507
Target:  5'- cGACGGgcgcGCAuCCGGcGCUCaUGUCGCc -3'
miRNA:   3'- cCUGCCaa--UGU-GGCC-CGAG-AUAGCGc -5'
16998 5' -54.4 NC_004333.2 + 27290 0.72 0.421052
Target:  5'- -cACGcGcUGCGCCGGGCUC-GUCGCc -3'
miRNA:   3'- ccUGC-CaAUGUGGCCCGAGaUAGCGc -5'
16998 5' -54.4 NC_004333.2 + 31513 0.75 0.294183
Target:  5'- -cGCGGUgcaGCACCGGGCaggucgaagugCUGUCGCa -3'
miRNA:   3'- ccUGCCAa--UGUGGCCCGa----------GAUAGCGc -5'
16998 5' -54.4 NC_004333.2 + 37421 0.76 0.246007
Target:  5'- --uCGGUUGCGCCGGGC-Cg--CGCGg -3'
miRNA:   3'- ccuGCCAAUGUGGCCCGaGauaGCGC- -5'
16998 5' -54.4 NC_004333.2 + 17036 0.79 0.160273
Target:  5'- cGGGCGGcgaugcauuCGCCGGGCUCgcgCGCGa -3'
miRNA:   3'- -CCUGCCaau------GUGGCCCGAGauaGCGC- -5'
16998 5' -54.4 NC_004333.2 + 46116 1.11 0.00097
Target:  5'- aGGACGGUUACACCGGGCUCUAUCGCGc -3'
miRNA:   3'- -CCUGCCAAUGUGGCCCGAGAUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.