Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17001 | 3' | -55.8 | NC_004333.2 | + | 3876 | 0.66 | 0.650898 |
Target: 5'- cGGGC-GCAGCGuaACGggauUGGUCAu -3' miRNA: 3'- -CCCGaUGUCGCcgUGCaacuGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 4211 | 0.69 | 0.478371 |
Target: 5'- uGGauuUGCAGCuGCGCGUUGACGcUCGa -3' miRNA: 3'- cCCg--AUGUCGcCGUGCAACUGCcAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 6585 | 0.69 | 0.482458 |
Target: 5'- uGGGCcgcagugcaaccagGCAGUcaacgaauGGCGCGUUGAagcCGGUCGu -3' miRNA: 3'- -CCCGa-------------UGUCG--------CCGUGCAACU---GCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 9225 | 0.66 | 0.628805 |
Target: 5'- cGGGCaugaAGCGGCGa-UUGcCGGUCGc -3' miRNA: 3'- -CCCGaug-UCGCCGUgcAACuGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 9561 | 0.66 | 0.628805 |
Target: 5'- cGGGCaccacggGCAGCGGCGCGcccGGCuGUa- -3' miRNA: 3'- -CCCGa------UGUCGCCGUGCaa-CUGcCAgu -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 11334 | 0.67 | 0.573789 |
Target: 5'- uGGGUUgAUAGCGGC-CGgcGAUGGcCGu -3' miRNA: 3'- -CCCGA-UGUCGCCGuGCaaCUGCCaGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 11915 | 0.67 | 0.594612 |
Target: 5'- cGGCaugcGCAGCGGCGCGcgcgccaUUacgcgcgcuccaGGCGGUCGa -3' miRNA: 3'- cCCGa---UGUCGCCGUGC-------AA------------CUGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 12708 | 0.7 | 0.428813 |
Target: 5'- cGGCccguugACGGUGcCgACGUUGACGGUCAc -3' miRNA: 3'- cCCGa-----UGUCGCcG-UGCAACUGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 13364 | 0.66 | 0.672921 |
Target: 5'- cGGGCgcgGCacgAGCGGCGUGUccaUGAucUGGUCGu -3' miRNA: 3'- -CCCGa--UG---UCGCCGUGCA---ACU--GCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 13903 | 0.7 | 0.438485 |
Target: 5'- cGGGCUgcGCGGCGGCugcCG-UGGCGaUCGu -3' miRNA: 3'- -CCCGA--UGUCGCCGu--GCaACUGCcAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 14118 | 0.66 | 0.661924 |
Target: 5'- cGGCUGCGGCGaaCACGggGAgUGGUa- -3' miRNA: 3'- cCCGAUGUCGCc-GUGCaaCU-GCCAgu -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 15282 | 0.66 | 0.650898 |
Target: 5'- -uGCUGCGGCGGC------GCGGUCAg -3' miRNA: 3'- ccCGAUGUCGCCGugcaacUGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 15497 | 0.73 | 0.292719 |
Target: 5'- aGGGCUGCucGCGGCGgucacCGgcGGCGcGUCAa -3' miRNA: 3'- -CCCGAUGu-CGCCGU-----GCaaCUGC-CAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 16566 | 0.66 | 0.672921 |
Target: 5'- cGGCcACAGCGGC-CGa-GACGG-CGc -3' miRNA: 3'- cCCGaUGUCGCCGuGCaaCUGCCaGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 18550 | 0.68 | 0.530584 |
Target: 5'- cGGGUgcgGCAGcCGGCGCGgcGGCGa--- -3' miRNA: 3'- -CCCGa--UGUC-GCCGUGCaaCUGCcagu -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 21425 | 0.66 | 0.661924 |
Target: 5'- uGGGCaaaUugGGCGGCGCaGgacgcgGACGGa-- -3' miRNA: 3'- -CCCG---AugUCGCCGUG-Caa----CUGCCagu -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 22176 | 0.67 | 0.573789 |
Target: 5'- -cGCcgGCGGCGGC-CGgcGGCGGUUc -3' miRNA: 3'- ccCGa-UGUCGCCGuGCaaCUGCCAGu -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 23113 | 0.67 | 0.573789 |
Target: 5'- cGGCUgaACGGCGGCACugauGUUGcgcGCGGa-- -3' miRNA: 3'- cCCGA--UGUCGCCGUG----CAAC---UGCCagu -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 24545 | 0.67 | 0.562896 |
Target: 5'- aGGCgaggACuucaaCGGCGCGUUGAaccaGGUCGc -3' miRNA: 3'- cCCGa---UGuc---GCCGUGCAACUg---CCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 24809 | 0.67 | 0.58473 |
Target: 5'- cGGaCUGacgGGCGGCACGgUGACGcUCAc -3' miRNA: 3'- cCC-GAUg--UCGCCGUGCaACUGCcAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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