miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 3' -55.8 NC_004333.2 + 14118 0.66 0.661924
Target:  5'- cGGCUGCGGCGaaCACGggGAgUGGUa- -3'
miRNA:   3'- cCCGAUGUCGCc-GUGCaaCU-GCCAgu -5'
17001 3' -55.8 NC_004333.2 + 31005 0.66 0.639855
Target:  5'- gGGGCUcGCAGCGGCcuUGUcGACGcG-CAc -3'
miRNA:   3'- -CCCGA-UGUCGCCGu-GCAaCUGC-CaGU- -5'
17001 3' -55.8 NC_004333.2 + 9561 0.66 0.628805
Target:  5'- cGGGCaccacggGCAGCGGCGCGcccGGCuGUa- -3'
miRNA:   3'- -CCCGa------UGUCGCCGUGCaa-CUGcCAgu -5'
17001 3' -55.8 NC_004333.2 + 9225 0.66 0.628805
Target:  5'- cGGGCaugaAGCGGCGa-UUGcCGGUCGc -3'
miRNA:   3'- -CCCGaug-UCGCCGUgcAACuGCCAGU- -5'
17001 3' -55.8 NC_004333.2 + 44967 0.66 0.628805
Target:  5'- gGGGCg--GGCGGCGCGccgGGcCGGcUCAc -3'
miRNA:   3'- -CCCGaugUCGCCGUGCaa-CU-GCC-AGU- -5'
17001 3' -55.8 NC_004333.2 + 33728 0.67 0.600113
Target:  5'- gGGGCaagACAGCGGacgaGCGUguguggcugaucgacUGGCGGcgCGa -3'
miRNA:   3'- -CCCGa--UGUCGCCg---UGCA---------------ACUGCCa-GU- -5'
17001 3' -55.8 NC_004333.2 + 24809 0.67 0.58473
Target:  5'- cGGaCUGacgGGCGGCACGgUGACGcUCAc -3'
miRNA:   3'- cCC-GAUg--UCGCCGUGCaACUGCcAGU- -5'
17001 3' -55.8 NC_004333.2 + 11334 0.67 0.573789
Target:  5'- uGGGUUgAUAGCGGC-CGgcGAUGGcCGu -3'
miRNA:   3'- -CCCGA-UGUCGCCGuGCaaCUGCCaGU- -5'
17001 3' -55.8 NC_004333.2 + 46605 0.67 0.562896
Target:  5'- uGGGCauCGaCGGCACGUUGuCGGcCGg -3'
miRNA:   3'- -CCCGauGUcGCCGUGCAACuGCCaGU- -5'
17001 3' -55.8 NC_004333.2 + 24545 0.67 0.562896
Target:  5'- aGGCgaggACuucaaCGGCGCGUUGAaccaGGUCGc -3'
miRNA:   3'- cCCGa---UGuc---GCCGUGCAACUg---CCAGU- -5'
17001 3' -55.8 NC_004333.2 + 29309 0.69 0.488621
Target:  5'- uGGGCgcccCGGCGGCaauGCGUUGcgcACGG-CAa -3'
miRNA:   3'- -CCCGau--GUCGCCG---UGCAAC---UGCCaGU- -5'
17001 3' -55.8 NC_004333.2 + 6585 0.69 0.482458
Target:  5'- uGGGCcgcagugcaaccagGCAGUcaacgaauGGCGCGUUGAagcCGGUCGu -3'
miRNA:   3'- -CCCGa-------------UGUCG--------CCGUGCAACU---GCCAGU- -5'
17001 3' -55.8 NC_004333.2 + 41579 0.69 0.458196
Target:  5'- cGGcGCUG-GGCGGCGCGccgUGGCGG-CGa -3'
miRNA:   3'- -CC-CGAUgUCGCCGUGCa--ACUGCCaGU- -5'
17001 3' -55.8 NC_004333.2 + 27655 0.7 0.438485
Target:  5'- aGGCcGCcagcgAGCGGCGCGgcGGCGGcCGg -3'
miRNA:   3'- cCCGaUG-----UCGCCGUGCaaCUGCCaGU- -5'
17001 3' -55.8 NC_004333.2 + 12708 0.7 0.428813
Target:  5'- cGGCccguugACGGUGcCgACGUUGACGGUCAc -3'
miRNA:   3'- cCCGa-----UGUCGCcG-UGCAACUGCCAGU- -5'
17001 3' -55.8 NC_004333.2 + 16566 0.66 0.672921
Target:  5'- cGGCcACAGCGGC-CGa-GACGG-CGc -3'
miRNA:   3'- cCCGaUGUCGCCGuGCaaCUGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.