miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17002 5' -55 NC_004333.2 + 39480 0.66 0.701809
Target:  5'- cGGcGUCAcGGUCGGCacguucgccgUGCUgaacgccgACGGCaCCg -3'
miRNA:   3'- aCCaUAGU-CCAGCUG----------ACGA--------UGCCG-GG- -5'
17002 5' -55 NC_004333.2 + 23368 0.66 0.668848
Target:  5'- -cGUG-CAGGUCGcgcaGCUGCcgaACGuGCCCg -3'
miRNA:   3'- acCAUaGUCCAGC----UGACGa--UGC-CGGG- -5'
17002 5' -55 NC_004333.2 + 17873 0.67 0.64668
Target:  5'- gUGGUGUCgcAGGcgCGACg---GCGGCCa -3'
miRNA:   3'- -ACCAUAG--UCCa-GCUGacgaUGCCGGg -5'
17002 5' -55 NC_004333.2 + 41637 0.67 0.624457
Target:  5'- cGGcagauUGUCGGG-CG-CggGCUGCGGCCg -3'
miRNA:   3'- aCC-----AUAGUCCaGCuGa-CGAUGCCGGg -5'
17002 5' -55 NC_004333.2 + 13348 0.67 0.624457
Target:  5'- ---cGUCAGGgauUCGACUGCUgGCgGGCaCCu -3'
miRNA:   3'- accaUAGUCC---AGCUGACGA-UG-CCG-GG- -5'
17002 5' -55 NC_004333.2 + 36753 0.68 0.602262
Target:  5'- cGGUcgaAGG-CGACgUGCUGCGGCa- -3'
miRNA:   3'- aCCAuagUCCaGCUG-ACGAUGCCGgg -5'
17002 5' -55 NC_004333.2 + 33156 0.68 0.569186
Target:  5'- aGGUGgcgaguuucgCGGcGUCGGCgucgGCGGCCCg -3'
miRNA:   3'- aCCAUa---------GUC-CAGCUGacgaUGCCGGG- -5'
17002 5' -55 NC_004333.2 + 32244 0.68 0.558254
Target:  5'- cGGaUAUC-GGUUGGCaGCaGCGGCCg -3'
miRNA:   3'- aCC-AUAGuCCAGCUGaCGaUGCCGGg -5'
17002 5' -55 NC_004333.2 + 15698 0.69 0.536578
Target:  5'- cUGGUGUUguccGGUUacaUGCUGCGGCUCg -3'
miRNA:   3'- -ACCAUAGu---CCAGcugACGAUGCCGGG- -5'
17002 5' -55 NC_004333.2 + 22498 0.69 0.536578
Target:  5'- aGGcugAUCAGGUCGccGCguucGCgACGGCCg -3'
miRNA:   3'- aCCa--UAGUCCAGC--UGa---CGaUGCCGGg -5'
17002 5' -55 NC_004333.2 + 40644 0.69 0.504644
Target:  5'- cUGGUAUCAGGcCGAa----GCGGCCg -3'
miRNA:   3'- -ACCAUAGUCCaGCUgacgaUGCCGGg -5'
17002 5' -55 NC_004333.2 + 13720 0.72 0.351585
Target:  5'- aUGGUAuUCAGGUCuaugaUGCggGCGGCCUc -3'
miRNA:   3'- -ACCAU-AGUCCAGcug--ACGa-UGCCGGG- -5'
17002 5' -55 NC_004333.2 + 22189 0.72 0.351585
Target:  5'- cGGcggCGGuUCGGCgGCUGCGGCCUg -3'
miRNA:   3'- aCCauaGUCcAGCUGaCGAUGCCGGG- -5'
17002 5' -55 NC_004333.2 + 44544 1.13 0.000514
Target:  5'- cUGGUAUCAGGUCGACUGCUACGGCCCg -3'
miRNA:   3'- -ACCAUAGUCCAGCUGACGAUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.