miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 3' -56.9 NC_004333.2 + 27255 0.67 0.559374
Target:  5'- cCGGGCGUcGgGuuGCaAUCCUgCGCGCCa -3'
miRNA:   3'- uGCUUGCA-CgCgcCG-UAGGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 10883 0.67 0.559374
Target:  5'- -aGAACGccgGCGCGacaGUCaCUUGCGCCg -3'
miRNA:   3'- ugCUUGCa--CGCGCcg-UAG-GAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 3223 0.67 0.552945
Target:  5'- cGCcGACGUGCGCGcGCAggauagcugccgacuUCUUCgGCGCg -3'
miRNA:   3'- -UGcUUGCACGCGC-CGU---------------AGGAG-UGCGg -5'
17004 3' -56.9 NC_004333.2 + 43444 0.67 0.548671
Target:  5'- gACGGACGcGCGCaucGCGcgCUUgCGCGCCg -3'
miRNA:   3'- -UGCUUGCaCGCGc--CGUa-GGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 796 0.67 0.548671
Target:  5'- uUGAGCGUGC-CGGUcgCCg-GCGCa -3'
miRNA:   3'- uGCUUGCACGcGCCGuaGGagUGCGg -5'
17004 3' -56.9 NC_004333.2 + 8980 0.67 0.538032
Target:  5'- gUGGGcCGUGCGCGGCGgcgaCCgaCGCGgCg -3'
miRNA:   3'- uGCUU-GCACGCGCCGUa---GGa-GUGCgG- -5'
17004 3' -56.9 NC_004333.2 + 37109 0.67 0.527465
Target:  5'- uCGGGCaGcUGCGgGGCGUgcucgaagCgCUCACGCCg -3'
miRNA:   3'- uGCUUG-C-ACGCgCCGUA--------G-GAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 30418 0.67 0.516976
Target:  5'- cCGAAUucGCGCGccguaGCGacugCCUCGCGCCa -3'
miRNA:   3'- uGCUUGcaCGCGC-----CGUa---GGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 27601 0.67 0.516976
Target:  5'- uCGAAUa-GCGCGGCGccUUCUgCAUGCCg -3'
miRNA:   3'- uGCUUGcaCGCGCCGU--AGGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 13987 0.67 0.516976
Target:  5'- cGCGAGC-UGCGCGcGCuUCUUUGCGUUu -3'
miRNA:   3'- -UGCUUGcACGCGC-CGuAGGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 13712 0.67 0.516976
Target:  5'- gACGAACGauaGCGCGucCAUgCUCGUGCCg -3'
miRNA:   3'- -UGCUUGCa--CGCGCc-GUAgGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 40014 0.67 0.516976
Target:  5'- cGCGAugGa-CGCGGCcgaCCUguCGCCa -3'
miRNA:   3'- -UGCUugCacGCGCCGua-GGAguGCGG- -5'
17004 3' -56.9 NC_004333.2 + 18398 0.68 0.506572
Target:  5'- cGCGAACGacccGCGCcagcucaugaacGGUAUCCa-ACGCCa -3'
miRNA:   3'- -UGCUUGCa---CGCG------------CCGUAGGagUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 13196 0.68 0.496258
Target:  5'- uACGAuCGUGUGCaGGCG-CgUCGCGUg -3'
miRNA:   3'- -UGCUuGCACGCG-CCGUaGgAGUGCGg -5'
17004 3' -56.9 NC_004333.2 + 27777 0.68 0.496258
Target:  5'- gACGAGCG-GCGCGGCcaCUgcggcCACgGCCu -3'
miRNA:   3'- -UGCUUGCaCGCGCCGuaGGa----GUG-CGG- -5'
17004 3' -56.9 NC_004333.2 + 4635 0.68 0.496258
Target:  5'- uGCGAucagGCGCGGuCAUCgUCgagauACGCCa -3'
miRNA:   3'- -UGCUugcaCGCGCC-GUAGgAG-----UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 38303 0.68 0.496258
Target:  5'- cGCGAcCGUGCacGCGGCGaCCggcgaaauGCGCCu -3'
miRNA:   3'- -UGCUuGCACG--CGCCGUaGGag------UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 27169 0.68 0.48604
Target:  5'- cGCGAucagccauGCGUGCccccgaggugugGCGGCAgaccgugCUUCGCGCg -3'
miRNA:   3'- -UGCU--------UGCACG------------CGCCGUa------GGAGUGCGg -5'
17004 3' -56.9 NC_004333.2 + 44392 0.68 0.48604
Target:  5'- gGCGGcGCGUGCGCGGUAcaacggCCUgccgggcucgCugGCUg -3'
miRNA:   3'- -UGCU-UGCACGCGCCGUa-----GGA----------GugCGG- -5'
17004 3' -56.9 NC_004333.2 + 39300 0.68 0.48604
Target:  5'- --cAAgGUGCGCGGCuaaC-CGCGCCg -3'
miRNA:   3'- ugcUUgCACGCGCCGuagGaGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.