Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17005 | 5' | -54.6 | NC_004333.2 | + | 11280 | 0.68 | 0.634102 |
Target: 5'- -aGUUCGCGu-UGCCG-CG-CGCUGUu -3' miRNA: 3'- cgCAAGCGUcuACGGCuGCuGCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 11224 | 0.67 | 0.656233 |
Target: 5'- uCGggCGCGGcuccuUGCCGGCGcucgagUGCUGCc -3' miRNA: 3'- cGCaaGCGUCu----ACGGCUGCu-----GCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 10998 | 0.68 | 0.634102 |
Target: 5'- cGCGUcgugaGCGGcGUGUCGcCG-CGCUGCg -3' miRNA: 3'- -CGCAag---CGUC-UACGGCuGCuGCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 10200 | 0.67 | 0.678272 |
Target: 5'- cGCGcacgCGCAuGcgGCCGuCGGCaucaaaGCUGCg -3' miRNA: 3'- -CGCaa--GCGU-CuaCGGCuGCUG------CGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 10167 | 0.66 | 0.753418 |
Target: 5'- cGgGUcggCGCacuGGAaGCCGAgCGACGCggGCa -3' miRNA: 3'- -CgCAa--GCG---UCUaCGGCU-GCUGCGa-CG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 9658 | 0.68 | 0.599812 |
Target: 5'- cGCG-UCGCacAGAucgacaaagaacgUGUCGA-GGCGCUGCg -3' miRNA: 3'- -CGCaAGCG--UCU-------------ACGGCUgCUGCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 9621 | 0.71 | 0.44279 |
Target: 5'- -gGUUgCGCAccGGcUGCCGGCGGCGCgccUGCg -3' miRNA: 3'- cgCAA-GCGU--CU-ACGGCUGCUGCG---ACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 9459 | 0.67 | 0.678272 |
Target: 5'- uGCGcaccaggCGCGGGUGCCGcaccgccgcCGA-GCUGCu -3' miRNA: 3'- -CGCaa-----GCGUCUACGGCu--------GCUgCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 9181 | 0.66 | 0.753418 |
Target: 5'- uGCGUUCguucgcgacgGCAG-UGUCGAUcGCGgUGCg -3' miRNA: 3'- -CGCAAG----------CGUCuACGGCUGcUGCgACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 9008 | 0.82 | 0.094267 |
Target: 5'- gGCGUUCGCGGcuUGCCaGGCGGCGC-GCu -3' miRNA: 3'- -CGCAAGCGUCu-ACGG-CUGCUGCGaCG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 8685 | 0.7 | 0.514215 |
Target: 5'- gGCGUUCaGCAcggcGAacgUGCCGACcguGACGCcGCu -3' miRNA: 3'- -CGCAAG-CGU----CU---ACGGCUG---CUGCGaCG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 8511 | 0.69 | 0.557084 |
Target: 5'- cGCGUUCGCgaAGAagucgcccgUGCCGAacaGCGCgaccgGCa -3' miRNA: 3'- -CGCAAGCG--UCU---------ACGGCUgc-UGCGa----CG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 8417 | 0.66 | 0.742965 |
Target: 5'- aCG-UCGCcgauacGGUGCCGcCGACGUUGa -3' miRNA: 3'- cGCaAGCGu-----CUACGGCuGCUGCGACg -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 5516 | 0.74 | 0.29571 |
Target: 5'- gGCGcugUUGCGGGcUGCuCGACGggagACGCUGCg -3' miRNA: 3'- -CGCa--AGCGUCU-ACG-GCUGC----UGCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 4856 | 0.76 | 0.216731 |
Target: 5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3' miRNA: 3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 3231 | 0.71 | 0.433042 |
Target: 5'- uGCGcgCGCAGGauagcUGCCGAcuucuuCGGCGC-GCg -3' miRNA: 3'- -CGCaaGCGUCU-----ACGGCU------GCUGCGaCG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 2866 | 0.66 | 0.72173 |
Target: 5'- gGCGUUCGC-GAa--CGACGuCGCaGCg -3' miRNA: 3'- -CGCAAGCGuCUacgGCUGCuGCGaCG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 2786 | 0.67 | 0.689232 |
Target: 5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3' miRNA: 3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 2458 | 0.69 | 0.567971 |
Target: 5'- aCGUUCGCgccgggcucgAGAUGCaGGCGuGCGUUGUg -3' miRNA: 3'- cGCAAGCG----------UCUACGgCUGC-UGCGACG- -5' |
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17005 | 5' | -54.6 | NC_004333.2 | + | 1254 | 0.73 | 0.318662 |
Target: 5'- cGCGaggcUUCGCGGc-GCUcGCGGCGCUGCa -3' miRNA: 3'- -CGC----AAGCGUCuaCGGcUGCUGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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