miRNA display CGI


Results 61 - 80 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 32883 0.67 0.700135
Target:  5'- aGCGcccggUGCuGAUGCUGACcGCGCcGCc -3'
miRNA:   3'- -CGCaa---GCGuCUACGGCUGcUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 31005 0.67 0.700135
Target:  5'- gGgGcUCGCAGcgGCCuuguCGACGC-GCa -3'
miRNA:   3'- -CgCaAGCGUCuaCGGcu--GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 35063 0.67 0.700135
Target:  5'- cGCaGcUCGC-GAUGCCGuacauCGACaacugGCUGCg -3'
miRNA:   3'- -CG-CaAGCGuCUACGGCu----GCUG-----CGACG- -5'
17005 5' -54.6 NC_004333.2 + 23183 0.66 0.72173
Target:  5'- aGCGUgacaggcggCGCGGAcGCaGACGuuGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGgCUGC--UGCGA-CG- -5'
17005 5' -54.6 NC_004333.2 + 11892 0.66 0.72173
Target:  5'- cGCGUaUCGCAuGgcGCagGACGucgcguguCGCUGCa -3'
miRNA:   3'- -CGCA-AGCGU-CuaCGg-CUGCu-------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 16315 0.68 0.611963
Target:  5'- cGCGaUUCaGCAGAUGCaGGCaaacaaccCGCUGCa -3'
miRNA:   3'- -CGC-AAG-CGUCUACGgCUGcu------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9658 0.68 0.599812
Target:  5'- cGCG-UCGCacAGAucgacaaagaacgUGUCGA-GGCGCUGCg -3'
miRNA:   3'- -CGCaAGCG--UCU-------------ACGGCUgCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 15200 0.68 0.5943
Target:  5'- cGCGUUC-CAGcacuAUGCCGAagucgcaaagcugccCGACGC-GCa -3'
miRNA:   3'- -CGCAAGcGUC----UACGGCU---------------GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 42969 0.76 0.222557
Target:  5'- -aGUUUGCGacGGUGCCGACGccGCGcCUGCa -3'
miRNA:   3'- cgCAAGCGU--CUACGGCUGC--UGC-GACG- -5'
17005 5' -54.6 NC_004333.2 + 20519 0.75 0.266451
Target:  5'- cGCGacUCGCAGGUGUcaauguuCGcCGACGCUGUg -3'
miRNA:   3'- -CGCa-AGCGUCUACG-------GCuGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 37960 0.75 0.267136
Target:  5'- cGCGcgCaGCuuuGAUGCCGACGGcCGCaUGCg -3'
miRNA:   3'- -CGCaaG-CGu--CUACGGCUGCU-GCG-ACG- -5'
17005 5' -54.6 NC_004333.2 + 5516 0.74 0.29571
Target:  5'- gGCGcugUUGCGGGcUGCuCGACGggagACGCUGCg -3'
miRNA:   3'- -CGCa--AGCGUCU-ACG-GCUGC----UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29746 0.74 0.308555
Target:  5'- cGCGcUCGCGG-UGUCGACGccgccgaucgcgagGCGUUGCg -3'
miRNA:   3'- -CGCaAGCGUCuACGGCUGC--------------UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 22514 0.74 0.310094
Target:  5'- cGCGUUCGCGacgGCCGGCaaGACGCUuucgaccGCg -3'
miRNA:   3'- -CGCAAGCGUcuaCGGCUG--CUGCGA-------CG- -5'
17005 5' -54.6 NC_004333.2 + 1254 0.73 0.318662
Target:  5'- cGCGaggcUUCGCGGc-GCUcGCGGCGCUGCa -3'
miRNA:   3'- -CGC----AAGCGUCuaCGGcUGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 44382 0.73 0.331441
Target:  5'- aGCGUccgcugCGCAGAUcgcgaagGCCGAucagaacgccacguCGACGCUGUa -3'
miRNA:   3'- -CGCAa-----GCGUCUA-------CGGCU--------------GCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 30707 0.72 0.395343
Target:  5'- aGCGUgagCGCGGcgGCCuuCG-CGUUGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCGGcuGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 3231 0.71 0.433042
Target:  5'- uGCGcgCGCAGGauagcUGCCGAcuucuuCGGCGC-GCg -3'
miRNA:   3'- -CGCaaGCGUCU-----ACGGCU------GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 2458 0.69 0.567971
Target:  5'- aCGUUCGCgccgggcucgAGAUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGgCUGC-UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 708 0.69 0.578911
Target:  5'- cGCGgcagUCGCc---GCCGGCG-CGUUGCu -3'
miRNA:   3'- -CGCa---AGCGucuaCGGCUGCuGCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.