miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 32883 0.67 0.700135
Target:  5'- aGCGcccggUGCuGAUGCUGACcGCGCcGCc -3'
miRNA:   3'- -CGCaa---GCGuCUACGGCUGcUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 23657 0.68 0.623028
Target:  5'- aGCGuUUCGCAGAUcGCgGuguGAUGCUGa -3'
miRNA:   3'- -CGC-AAGCGUCUA-CGgCug-CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 16880 0.68 0.634102
Target:  5'- gGCGUcggCGCAGGUGCgGcCGGucuCGCcgGCa -3'
miRNA:   3'- -CGCAa--GCGUCUACGgCuGCU---GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 10998 0.68 0.634102
Target:  5'- cGCGUcgugaGCGGcGUGUCGcCG-CGCUGCg -3'
miRNA:   3'- -CGCAag---CGUC-UACGGCuGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 28753 0.67 0.645173
Target:  5'- cGCGUgaacgUCGCGGGUaGCgCGGCGuagGCGUaGCg -3'
miRNA:   3'- -CGCA-----AGCGUCUA-CG-GCUGC---UGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 34285 0.67 0.656233
Target:  5'- cGCcg-CGCAGcccGUGCCGgccgacuucgcGCGGCGCgGCg -3'
miRNA:   3'- -CGcaaGCGUC---UACGGC-----------UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 23484 0.67 0.656233
Target:  5'- cGCGcgCGCGGAUcggcaugcaGuuGAuCGGCGCaGCg -3'
miRNA:   3'- -CGCaaGCGUCUA---------CggCU-GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 19048 0.67 0.667269
Target:  5'- uGCGaUgGCGGAUGCUGACcGucCGCcgGCu -3'
miRNA:   3'- -CGCaAgCGUCUACGGCUG-Cu-GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 27667 0.67 0.667269
Target:  5'- aGCGgcgCgGCGGcgGCCGGCaGCgGUUGCg -3'
miRNA:   3'- -CGCaa-G-CGUCuaCGGCUGcUG-CGACG- -5'
17005 5' -54.6 NC_004333.2 + 45492 0.67 0.678272
Target:  5'- uCGgcCGCc---GCCGgcGCGACGCUGCa -3'
miRNA:   3'- cGCaaGCGucuaCGGC--UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29933 0.67 0.689232
Target:  5'- uGCGgauuaGCAGcGUGCCGuCGGCGUcGUa -3'
miRNA:   3'- -CGCaag--CGUC-UACGGCuGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 2786 0.67 0.689232
Target:  5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3'
miRNA:   3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 33258 0.71 0.411107
Target:  5'- uGCGUUCGuCGGAUgauugucaaguucaGCCGAgCGcgcGCGUUGCg -3'
miRNA:   3'- -CGCAAGC-GUCUA--------------CGGCU-GC---UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 18486 0.72 0.404569
Target:  5'- gGCGUacccgccgUUGCcGGcacGCCGACgGACGCUGCa -3'
miRNA:   3'- -CGCA--------AGCGuCUa--CGGCUG-CUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 25940 0.72 0.386255
Target:  5'- cGCGcggCGC-GAUGCCGGCGgccaguacgcgGCGCUGg -3'
miRNA:   3'- -CGCaa-GCGuCUACGGCUGC-----------UGCGACg -5'
17005 5' -54.6 NC_004333.2 + 1123 0.72 0.377306
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29868 0.75 0.260351
Target:  5'- aGCGcgCGCGGuagucGUCGGCGaaGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCua---CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 37198 0.75 0.253706
Target:  5'- aCGcgCGCcGGUGCCGaguuccgccGCGACGCUGUg -3'
miRNA:   3'- cGCaaGCGuCUACGGC---------UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 4856 0.76 0.216731
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 18209 0.66 0.753418
Target:  5'- cGCGgcaUCGCaauacgcgccGGAaaucuacgacGCCGACGgcACGCUGCu -3'
miRNA:   3'- -CGCa--AGCG----------UCUa---------CGGCUGC--UGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.