miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 3' -52.3 NC_004333.2 + 13188 0.67 0.773481
Target:  5'- gGGCGCGauacgaUCGUGugcaggcgcGUCGCGUggacuucGGUGCc -3'
miRNA:   3'- gCCGCGU------AGCAUuu-------UAGCGCG-------CCACG- -5'
17008 3' -52.3 NC_004333.2 + 36887 0.68 0.767274
Target:  5'- aCGGCGCAguucaacagCGCGCGGcaacGCg -3'
miRNA:   3'- -GCCGCGUagcauuuuaGCGCGCCa---CG- -5'
17008 3' -52.3 NC_004333.2 + 41588 0.68 0.76415
Target:  5'- gCGGCGCGcCGUGGcggCGaUGCGG-GCu -3'
miRNA:   3'- -GCCGCGUaGCAUUuuaGC-GCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 10213 0.68 0.76415
Target:  5'- gCGGC-CGUCGgcaucAAAgcugCGCGCGGUcuGCu -3'
miRNA:   3'- -GCCGcGUAGCau---UUUa---GCGCGCCA--CG- -5'
17008 3' -52.3 NC_004333.2 + 17849 0.68 0.76415
Target:  5'- cCGGUGCGgccgcgCGUAugg-CGgGUGGUGUc -3'
miRNA:   3'- -GCCGCGUa-----GCAUuuuaGCgCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 30770 0.68 0.76415
Target:  5'- -aGCGCGUCGUGAc--CGCGCuGcGCg -3'
miRNA:   3'- gcCGCGUAGCAUUuuaGCGCGcCaCG- -5'
17008 3' -52.3 NC_004333.2 + 27668 0.68 0.76415
Target:  5'- gCGGCGCggCGgcGgccggcagcGGUUGCGCGGcaGCc -3'
miRNA:   3'- -GCCGCGuaGCauU---------UUAGCGCGCCa-CG- -5'
17008 3' -52.3 NC_004333.2 + 28590 0.68 0.753647
Target:  5'- --uCGCGUCGUu-GAUCGCGCGcgauuccccuuGUGCc -3'
miRNA:   3'- gccGCGUAGCAuuUUAGCGCGC-----------CACG- -5'
17008 3' -52.3 NC_004333.2 + 29859 0.68 0.753647
Target:  5'- aCGGCGUgaggAUCGUGcgcaCGCGC-GUGCc -3'
miRNA:   3'- -GCCGCG----UAGCAUuuuaGCGCGcCACG- -5'
17008 3' -52.3 NC_004333.2 + 10648 0.68 0.753647
Target:  5'- gCGGCGaagaAagGUGAcgucacGGUCGCGCcggccGGUGCa -3'
miRNA:   3'- -GCCGCg---UagCAUU------UUAGCGCG-----CCACG- -5'
17008 3' -52.3 NC_004333.2 + 22593 0.68 0.747283
Target:  5'- uCGGCGC-UCGUGuuguucgcguccgucGGguucGUCGCGCcuGUGCg -3'
miRNA:   3'- -GCCGCGuAGCAU---------------UU----UAGCGCGc-CACG- -5'
17008 3' -52.3 NC_004333.2 + 16867 0.68 0.743015
Target:  5'- gGGCGCcgugcUCGgc--GUCgGCGCaGGUGCg -3'
miRNA:   3'- gCCGCGu----AGCauuuUAG-CGCG-CCACG- -5'
17008 3' -52.3 NC_004333.2 + 35793 0.68 0.743015
Target:  5'- uGGCGCGcCGggcgGGGcgCGgGCGG-GCg -3'
miRNA:   3'- gCCGCGUaGCa---UUUuaGCgCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 21413 0.68 0.732265
Target:  5'- gCGGCGCcggaAUgGgcAAAUUGgGCGGcGCa -3'
miRNA:   3'- -GCCGCG----UAgCauUUUAGCgCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 40516 0.68 0.729019
Target:  5'- cCGGCaGUcgaagcgGUCGUGAAcgaagucGUCGCGCuguuccaGGUGCu -3'
miRNA:   3'- -GCCG-CG-------UAGCAUUU-------UAGCGCG-------CCACG- -5'
17008 3' -52.3 NC_004333.2 + 18367 0.68 0.72141
Target:  5'- aCGGCGUGUCGUuuAAccUCGC-CGGcaucaUGCu -3'
miRNA:   3'- -GCCGCGUAGCAuuUU--AGCGcGCC-----ACG- -5'
17008 3' -52.3 NC_004333.2 + 8648 0.68 0.72141
Target:  5'- uCGGCGCGgcgccCGgcuugcUCGUGaCGGUGCc -3'
miRNA:   3'- -GCCGCGUa----GCauuuu-AGCGC-GCCACG- -5'
17008 3' -52.3 NC_004333.2 + 43257 0.69 0.710462
Target:  5'- aCGGCGCGaUGUuuuGGAUgGCGaCGGcGCa -3'
miRNA:   3'- -GCCGCGUaGCAu--UUUAgCGC-GCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 17715 0.69 0.699434
Target:  5'- aGGCGCAgcCGUGAcGUCGa-CGGUGa -3'
miRNA:   3'- gCCGCGUa-GCAUUuUAGCgcGCCACg -5'
17008 3' -52.3 NC_004333.2 + 16673 0.69 0.692783
Target:  5'- cCGGUGCugcac-----CGCGCGGUGCg -3'
miRNA:   3'- -GCCGCGuagcauuuuaGCGCGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.