miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 3' -54.1 NC_004333.2 + 44112 0.67 0.648525
Target:  5'- uCGCAucguuUCGCGGcGGCuggugguaUAUCACGCAg -3'
miRNA:   3'- uGCGUu----AGCGUC-CCGua------GUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 43923 0.67 0.637191
Target:  5'- gGCGCAcgaacgUGCGcGGCAUCcUCACGCc -3'
miRNA:   3'- -UGCGUua----GCGUcCCGUAGuAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 11956 0.67 0.637191
Target:  5'- gACGCGA-CGCAaGGCAUUcgCACGa- -3'
miRNA:   3'- -UGCGUUaGCGUcCCGUAGuaGUGCgu -5'
17010 3' -54.1 NC_004333.2 + 19421 0.67 0.625852
Target:  5'- cGCGCGGUCGaCGcGGCG-C-UCGCGCAg -3'
miRNA:   3'- -UGCGUUAGC-GUcCCGUaGuAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 43553 0.67 0.625852
Target:  5'- cGCGCcuGAUCGCAuuaauGGCGU-GUCGCGCGc -3'
miRNA:   3'- -UGCG--UUAGCGUc----CCGUAgUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 28988 0.68 0.614518
Target:  5'- uGCGCGGcCGCcGGGuCGgcgugcgCAUCGCGCGc -3'
miRNA:   3'- -UGCGUUaGCGuCCC-GUa------GUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 13424 0.68 0.614518
Target:  5'- cUGCAuggauAUCGC-GGGCggCGUCACGUc -3'
miRNA:   3'- uGCGU-----UAGCGuCCCGuaGUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 9895 0.68 0.614518
Target:  5'- cGCGCGugcaucgaucucGUCGaacaggcacuuCAGGGCGUgCAUCACGUu -3'
miRNA:   3'- -UGCGU------------UAGC-----------GUCCCGUA-GUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 3298 0.68 0.614518
Target:  5'- gGCGCAGcgaGUcGGGCAggUUGUCGCGCGc -3'
miRNA:   3'- -UGCGUUag-CGuCCCGU--AGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 34419 0.68 0.603201
Target:  5'- cGCGCGAgcggCGCGcGGCGUCcuaCGCGCu -3'
miRNA:   3'- -UGCGUUa---GCGUcCCGUAGua-GUGCGu -5'
17010 3' -54.1 NC_004333.2 + 47025 0.68 0.603201
Target:  5'- cCGCGAUCggauauGCAGuGCAaCGUCGCGCGc -3'
miRNA:   3'- uGCGUUAG------CGUCcCGUaGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 11703 0.68 0.603201
Target:  5'- gACGCAG-CGCcGGGCggCGUgCugGCGu -3'
miRNA:   3'- -UGCGUUaGCGuCCCGuaGUA-GugCGU- -5'
17010 3' -54.1 NC_004333.2 + 43152 0.68 0.591911
Target:  5'- uCGgGAUCGUguccGGG-AUCGUCACGCAc -3'
miRNA:   3'- uGCgUUAGCGu---CCCgUAGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 15082 0.68 0.591911
Target:  5'- gGCGCGA-CGaAGGGCucGUgAUCACGCu -3'
miRNA:   3'- -UGCGUUaGCgUCCCG--UAgUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 17197 0.68 0.591911
Target:  5'- cCGCAAcaGCAGGGCuuuauggaGUCGCGCu -3'
miRNA:   3'- uGCGUUagCGUCCCGuag-----UAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 23894 0.68 0.569447
Target:  5'- cGCGCAGUCGCcGGGCGaCAauuUCGgGUu -3'
miRNA:   3'- -UGCGUUAGCGuCCCGUaGU---AGUgCGu -5'
17010 3' -54.1 NC_004333.2 + 40766 0.68 0.558292
Target:  5'- aGCGCAucgCGCAGaccuGGCcgCAggCACGCGu -3'
miRNA:   3'- -UGCGUua-GCGUC----CCGuaGUa-GUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 46167 0.69 0.547199
Target:  5'- cCGUGA-CGUcGGGCAUCAUC-CGCGc -3'
miRNA:   3'- uGCGUUaGCGuCCCGUAGUAGuGCGU- -5'
17010 3' -54.1 NC_004333.2 + 45233 0.69 0.547199
Target:  5'- cGCGCAGcUGCAGGGCuacagCggCACGUu -3'
miRNA:   3'- -UGCGUUaGCGUCCCGua---GuaGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 30919 0.69 0.536178
Target:  5'- -gGCAAUCuGCAGcGCGUCcUCAUGCGc -3'
miRNA:   3'- ugCGUUAG-CGUCcCGUAGuAGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.