miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 5' -61.8 NC_004333.2 + 27229 0.66 0.327733
Target:  5'- uUGCGUccggccccGUGGcGUa-GCCGCCGGgCGUCg -3'
miRNA:   3'- -ACGCG--------UACC-CAgaCGGCGGCUgGCGG- -5'
17010 5' -61.8 NC_004333.2 + 47472 0.66 0.325422
Target:  5'- cGCGCcgGcGGcgaCUGCCgcgcugaacgaggcGCCGGCCGgCg -3'
miRNA:   3'- aCGCGuaC-CCa--GACGG--------------CGGCUGGCgG- -5'
17010 5' -61.8 NC_004333.2 + 41650 0.67 0.320077
Target:  5'- gGCGC--GGG-CUGCgGCCGuaCGCCg -3'
miRNA:   3'- aCGCGuaCCCaGACGgCGGCugGCGG- -5'
17010 5' -61.8 NC_004333.2 + 26480 0.67 0.312555
Target:  5'- gUGCGCAUagaGcGcGUCgaGCUGCuCGGCCGUCa -3'
miRNA:   3'- -ACGCGUA---C-C-CAGa-CGGCG-GCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 26698 0.67 0.312555
Target:  5'- gGUGUAUGGauGUCgaUGcCCGCCGcGCCgGCCa -3'
miRNA:   3'- aCGCGUACC--CAG--AC-GGCGGC-UGG-CGG- -5'
17010 5' -61.8 NC_004333.2 + 20423 0.67 0.305168
Target:  5'- gUGCGCcugacGGGcUCgGCgGCCGACCagauucgcGCCg -3'
miRNA:   3'- -ACGCGua---CCC-AGaCGgCGGCUGG--------CGG- -5'
17010 5' -61.8 NC_004333.2 + 26429 0.67 0.305168
Target:  5'- gGCGuCAU-GGUCaauugugcggcgUGCCGaCCuGGCCGCCu -3'
miRNA:   3'- aCGC-GUAcCCAG------------ACGGC-GG-CUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 43276 0.67 0.305168
Target:  5'- gGCGCAaGGGgc-GCCGaucCCGGCCGgCu -3'
miRNA:   3'- aCGCGUaCCCagaCGGC---GGCUGGCgG- -5'
17010 5' -61.8 NC_004333.2 + 9458 0.67 0.297916
Target:  5'- cUGCGCAccaggcgcGGGU--GCCGCaCcGCCGCCg -3'
miRNA:   3'- -ACGCGUa-------CCCAgaCGGCG-GcUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 706 0.67 0.290799
Target:  5'- aGCGCGgcaGUC-GCCGCCGGCgCGUUg -3'
miRNA:   3'- aCGCGUaccCAGaCGGCGGCUG-GCGG- -5'
17010 5' -61.8 NC_004333.2 + 25297 0.67 0.283815
Target:  5'- cGuCGCAaccGGGcCgacGCCGgCGACUGCCg -3'
miRNA:   3'- aC-GCGUa--CCCaGa--CGGCgGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 25987 0.68 0.270246
Target:  5'- gGcCGCAgccGcCgaaccGCCGCCGGCCGCCg -3'
miRNA:   3'- aC-GCGUaccCaGa----CGGCGGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 4860 0.68 0.270246
Target:  5'- cGCGcCGUGccgaUGCCGCUG-CCGCCg -3'
miRNA:   3'- aCGC-GUACccagACGGCGGCuGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 229 0.68 0.269581
Target:  5'- aUGUGCGUcGGGUCgccccacgccgUGCCGuUCGauguggucgucacGCCGCCg -3'
miRNA:   3'- -ACGCGUA-CCCAG-----------ACGGC-GGC-------------UGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 29205 0.68 0.26366
Target:  5'- cGCGCAUGGcGUCguuccaGCCGuuG-CC-CCa -3'
miRNA:   3'- aCGCGUACC-CAGa-----CGGCggCuGGcGG- -5'
17010 5' -61.8 NC_004333.2 + 22598 0.68 0.26366
Target:  5'- cGCuGCGUGGcaggcgcuGUUUGCgcaGCUGAUCGCCa -3'
miRNA:   3'- aCG-CGUACC--------CAGACGg--CGGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 39393 0.68 0.26366
Target:  5'- gGCGCAaGGcaUUGCCGgCGACuuCGCCa -3'
miRNA:   3'- aCGCGUaCCcaGACGGCgGCUG--GCGG- -5'
17010 5' -61.8 NC_004333.2 + 44964 0.68 0.257205
Target:  5'- cGCGCAc--GUCgGCgGCCGACUGCa -3'
miRNA:   3'- aCGCGUaccCAGaCGgCGGCUGGCGg -5'
17010 5' -61.8 NC_004333.2 + 20979 0.68 0.257205
Target:  5'- cGCGCGaagcacGGUCUGCCGCCacaccucgggGGCaCGCa -3'
miRNA:   3'- aCGCGUac----CCAGACGGCGG----------CUG-GCGg -5'
17010 5' -61.8 NC_004333.2 + 13895 0.68 0.257205
Target:  5'- gGCcgGCAcGGG-CUGCgCGgCGGCUGCCg -3'
miRNA:   3'- aCG--CGUaCCCaGACG-GCgGCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.