miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17011 3' -57.5 NC_004333.2 + 12811 0.67 0.537795
Target:  5'- -gUGC-CGUCaGGCGGCuuGGgGGCGGCu -3'
miRNA:   3'- ugAUGaGCAGgCUGCCG--CUgUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 2684 0.67 0.52731
Target:  5'- uGCaGCgUCGcgCCGGCGGCGGCcGacaGGCc -3'
miRNA:   3'- -UGaUG-AGCa-GGCUGCCGCUGuCg--CCG- -5'
17011 3' -57.5 NC_004333.2 + 15601 0.67 0.52731
Target:  5'- cGCUGCUCGUCgGucACGGUuuCGGCGa- -3'
miRNA:   3'- -UGAUGAGCAGgC--UGCCGcuGUCGCcg -5'
17011 3' -57.5 NC_004333.2 + 13937 0.67 0.516903
Target:  5'- cGCUGCcgccagCGUggCCGccuUGGCGACuucaGGCGGCg -3'
miRNA:   3'- -UGAUGa-----GCA--GGCu--GCCGCUG----UCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 41691 0.67 0.516903
Target:  5'- -gUGCUCGacgCgGGCGGCaACuucgGGCGGCa -3'
miRNA:   3'- ugAUGAGCa--GgCUGCCGcUG----UCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 18193 0.67 0.516903
Target:  5'- uGCUcgcGCUCGg-CGcCGGUGGCAgcGCGGCc -3'
miRNA:   3'- -UGA---UGAGCagGCuGCCGCUGU--CGCCG- -5'
17011 3' -57.5 NC_004333.2 + 8664 0.67 0.515867
Target:  5'- cUUGCUCGUgacggugCCGuCGGCGuuCAGCacGGCg -3'
miRNA:   3'- uGAUGAGCA-------GGCuGCCGCu-GUCG--CCG- -5'
17011 3' -57.5 NC_004333.2 + 13905 0.67 0.506578
Target:  5'- gGCUGCgcggCGgcugCCG-UGGCGAUcGUGGCc -3'
miRNA:   3'- -UGAUGa---GCa---GGCuGCCGCUGuCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 9347 0.67 0.506578
Target:  5'- -aUGCUCGUCguCGGCGcGCGGCGuCGGg -3'
miRNA:   3'- ugAUGAGCAG--GCUGC-CGCUGUcGCCg -5'
17011 3' -57.5 NC_004333.2 + 40375 0.67 0.506578
Target:  5'- aACUACUCGUCCGcgcuCGGCcu-GGCGa- -3'
miRNA:   3'- -UGAUGAGCAGGCu---GCCGcugUCGCcg -5'
17011 3' -57.5 NC_004333.2 + 41574 0.67 0.506578
Target:  5'- gACUGCggCGcUgGGCGGCGcGCcguGGCGGCg -3'
miRNA:   3'- -UGAUGa-GCaGgCUGCCGC-UG---UCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 23150 0.67 0.506578
Target:  5'- aACUACcCGauUCCGGCgcacuccguGGCGAUcagcgugacaGGCGGCg -3'
miRNA:   3'- -UGAUGaGC--AGGCUG---------CCGCUG----------UCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 23096 0.67 0.506578
Target:  5'- aGCUGCaUCGguugCGuCGGCuGaACGGCGGCa -3'
miRNA:   3'- -UGAUG-AGCag--GCuGCCG-C-UGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 45019 0.67 0.496343
Target:  5'- gGCcGCUCGaCCG-CGcGUGGCgcuGGCGGCg -3'
miRNA:   3'- -UGaUGAGCaGGCuGC-CGCUG---UCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 39443 0.67 0.496343
Target:  5'- aGCUG-UCGUCCaACGGCaagaugaucgcgGACucgAGCGGCg -3'
miRNA:   3'- -UGAUgAGCAGGcUGCCG------------CUG---UCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 33991 0.67 0.496343
Target:  5'- uGCUGC-CGcaucCCGACGaGCGACc-CGGCa -3'
miRNA:   3'- -UGAUGaGCa---GGCUGC-CGCUGucGCCG- -5'
17011 3' -57.5 NC_004333.2 + 1503 0.67 0.496343
Target:  5'- aACUGCgCGagCGACGGCGAguCGGCcuGCa -3'
miRNA:   3'- -UGAUGaGCagGCUGCCGCU--GUCGc-CG- -5'
17011 3' -57.5 NC_004333.2 + 44323 0.68 0.486202
Target:  5'- ---cCUCGUUCuGCGGCGGCAacaCGGCu -3'
miRNA:   3'- ugauGAGCAGGcUGCCGCUGUc--GCCG- -5'
17011 3' -57.5 NC_004333.2 + 17491 0.68 0.486202
Target:  5'- gUUGC-CGccgCCGGCGGCGGCGcgaaCGGCu -3'
miRNA:   3'- uGAUGaGCa--GGCUGCCGCUGUc---GCCG- -5'
17011 3' -57.5 NC_004333.2 + 44091 0.68 0.480165
Target:  5'- --cGCUCGguaagGGCGGCGACuucgcaucguuucgcGGCGGCu -3'
miRNA:   3'- ugaUGAGCagg--CUGCCGCUG---------------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.