miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17012 3' -58.9 NC_004333.2 + 47190 0.66 0.541294
Target:  5'- uGCCGCGCagcacgaggcacaaGUCGccgCGACGGGCgCGc -3'
miRNA:   3'- gCGGUGUGga------------CAGCa--GCUGCCCGaGC- -5'
17012 3' -58.9 NC_004333.2 + 36307 0.66 0.540253
Target:  5'- gCGCCGC-CCgaGUaGUCGcCGGGCgUCGc -3'
miRNA:   3'- -GCGGUGuGGa-CAgCAGCuGCCCG-AGC- -5'
17012 3' -58.9 NC_004333.2 + 15594 0.66 0.540253
Target:  5'- gGUCGCACgCUGcUCGUCGgucACGGuuUCGg -3'
miRNA:   3'- gCGGUGUG-GAC-AGCAGC---UGCCcgAGC- -5'
17012 3' -58.9 NC_004333.2 + 17673 0.66 0.540253
Target:  5'- gGCCGgcaGCCUgGUCGgccgcaCGcuCGGGCUCGa -3'
miRNA:   3'- gCGGUg--UGGA-CAGCa-----GCu-GCCCGAGC- -5'
17012 3' -58.9 NC_004333.2 + 19410 0.66 0.52988
Target:  5'- cCGCCGCgACCcgcgcgGUCGaCG-CGGcGCUCGc -3'
miRNA:   3'- -GCGGUG-UGGa-----CAGCaGCuGCC-CGAGC- -5'
17012 3' -58.9 NC_004333.2 + 37303 0.66 0.519582
Target:  5'- gGCgACGCgUuccaGUCGgucgCGGCGGuGCUCGa -3'
miRNA:   3'- gCGgUGUGgA----CAGCa---GCUGCC-CGAGC- -5'
17012 3' -58.9 NC_004333.2 + 43730 0.66 0.519582
Target:  5'- gCGUCGCAacaaUGgcccgCGUUGGCGGGUUUGa -3'
miRNA:   3'- -GCGGUGUgg--ACa----GCAGCUGCCCGAGC- -5'
17012 3' -58.9 NC_004333.2 + 43251 0.66 0.499229
Target:  5'- gCGCCGCAUCUGccaGUgaGACGGGggCGc -3'
miRNA:   3'- -GCGGUGUGGACag-CAg-CUGCCCgaGC- -5'
17012 3' -58.9 NC_004333.2 + 20585 0.66 0.489185
Target:  5'- gCGCCGCGCUauUCGaCGuCGGGCaUCa -3'
miRNA:   3'- -GCGGUGUGGacAGCaGCuGCCCG-AGc -5'
17012 3' -58.9 NC_004333.2 + 31301 0.67 0.450013
Target:  5'- gGCCGCACCUG-CGcCGACGccgagcacGGCg-- -3'
miRNA:   3'- gCGGUGUGGACaGCaGCUGC--------CCGagc -5'
17012 3' -58.9 NC_004333.2 + 42853 0.68 0.41263
Target:  5'- gCGCCGCAUCUGccaGUgaGACGGGggCGg -3'
miRNA:   3'- -GCGGUGUGGACag-CAg-CUGCCCgaGC- -5'
17012 3' -58.9 NC_004333.2 + 13875 0.68 0.385884
Target:  5'- gCGCCGCGCCgcgcgaaGUCGgcCGgcACGGGCUgCGc -3'
miRNA:   3'- -GCGGUGUGGa------CAGCa-GC--UGCCCGA-GC- -5'
17012 3' -58.9 NC_004333.2 + 30447 0.68 0.377226
Target:  5'- gCGCCACGUCUGUuucacCGUCGACGucacGGCUgCGc -3'
miRNA:   3'- -GCGGUGUGGACA-----GCAGCUGC----CCGA-GC- -5'
17012 3' -58.9 NC_004333.2 + 37739 0.69 0.360308
Target:  5'- uGCCGCGCCUGcgCGagaUCGACGaGCgUCGu -3'
miRNA:   3'- gCGGUGUGGACa-GC---AGCUGCcCG-AGC- -5'
17012 3' -58.9 NC_004333.2 + 36479 0.69 0.328088
Target:  5'- aCGCCGCccgGCgCUG-CGUCGACGGauauGUUCGa -3'
miRNA:   3'- -GCGGUG---UG-GACaGCAGCUGCC----CGAGC- -5'
17012 3' -58.9 NC_004333.2 + 20554 0.7 0.320373
Target:  5'- gGCCGCGCCgcUGaUCGUCGGCGcgucGGgUCGc -3'
miRNA:   3'- gCGGUGUGG--AC-AGCAGCUGC----CCgAGC- -5'
17012 3' -58.9 NC_004333.2 + 21653 0.75 0.135082
Target:  5'- uCGCCGCACCUGUCGgcgcgccggacuucaUCGACGgaaauGGCgugCGg -3'
miRNA:   3'- -GCGGUGUGGACAGC---------------AGCUGC-----CCGa--GC- -5'
17012 3' -58.9 NC_004333.2 + 21859 0.75 0.133626
Target:  5'- gCGUCGCAcaaauCCUGUCGUCGACcGGCUUu -3'
miRNA:   3'- -GCGGUGU-----GGACAGCAGCUGcCCGAGc -5'
17012 3' -58.9 NC_004333.2 + 29587 0.77 0.107403
Target:  5'- uGCCGCGCCgGUCGUuuguugcaCGaACGGGUUCGg -3'
miRNA:   3'- gCGGUGUGGaCAGCA--------GC-UGCCCGAGC- -5'
17012 3' -58.9 NC_004333.2 + 40036 1.08 0.00055
Target:  5'- uCGCCACACCUGUCGUCGACGGGCUCGu -3'
miRNA:   3'- -GCGGUGUGGACAGCAGCUGCCCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.