miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17012 5' -52.4 NC_004333.2 + 3165 0.68 0.768919
Target:  5'- aCCGggUUGCacgGACGuauCCUGCGUg- -3'
miRNA:   3'- gGGCuuGAUGga-CUGCu--GGAUGCAgc -5'
17012 5' -52.4 NC_004333.2 + 14493 0.66 0.885646
Target:  5'- gUCGGAC-GCCUGGcCGuCCUugaACGUCGc -3'
miRNA:   3'- gGGCUUGaUGGACU-GCuGGA---UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 44887 0.75 0.399305
Target:  5'- gCCCGAcucGCUGCgccagCUGAUGAgCUGCGUCu -3'
miRNA:   3'- -GGGCU---UGAUG-----GACUGCUgGAUGCAGc -5'
17012 5' -52.4 NC_004333.2 + 41879 0.74 0.418047
Target:  5'- gCCCGAACaGCCcGAauuCGACCUGCG-CGu -3'
miRNA:   3'- -GGGCUUGaUGGaCU---GCUGGAUGCaGC- -5'
17012 5' -52.4 NC_004333.2 + 46742 0.71 0.595091
Target:  5'- aCCGAACUgACC-GACGcACUcgGCGUCGa -3'
miRNA:   3'- gGGCUUGA-UGGaCUGC-UGGa-UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 17558 0.7 0.63942
Target:  5'- cCCCGAagcGCUGCaC-GACGACCUGaucggcaaGUCGc -3'
miRNA:   3'- -GGGCU---UGAUG-GaCUGCUGGAUg-------CAGC- -5'
17012 5' -52.4 NC_004333.2 + 9034 0.7 0.672629
Target:  5'- gCUC--GCUGCCuuUGGCGACCUgcgacACGUCGa -3'
miRNA:   3'- -GGGcuUGAUGG--ACUGCUGGA-----UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 2177 0.7 0.683636
Target:  5'- aCCCacagGAACuUGCCUGACaGCUUGcCGUCGu -3'
miRNA:   3'- -GGG----CUUG-AUGGACUGcUGGAU-GCAGC- -5'
17012 5' -52.4 NC_004333.2 + 7435 0.68 0.768919
Target:  5'- gCCCaGAGCUGCacgaGACGGCCcgACGcCGu -3'
miRNA:   3'- -GGG-CUUGAUGga--CUGCUGGa-UGCaGC- -5'
17012 5' -52.4 NC_004333.2 + 7669 0.67 0.836253
Target:  5'- aCCGcuucGACUGCCggcGAaccCGACCacgGCGUCGu -3'
miRNA:   3'- gGGC----UUGAUGGa--CU---GCUGGa--UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 30855 0.67 0.836253
Target:  5'- gUCGAGC-GCCUGGCGGuucuCCUccgACGUCu -3'
miRNA:   3'- gGGCUUGaUGGACUGCU----GGA---UGCAGc -5'
17012 5' -52.4 NC_004333.2 + 43621 0.67 0.808501
Target:  5'- aCCCGGACgAgCUcACGGCCcgUGCGUCc -3'
miRNA:   3'- -GGGCUUGaUgGAcUGCUGG--AUGCAGc -5'
17012 5' -52.4 NC_004333.2 + 11711 0.67 0.836253
Target:  5'- gCCGGGCgGCgugCUGGCGuCCUGCG-CGa -3'
miRNA:   3'- gGGCUUGaUG---GACUGCuGGAUGCaGC- -5'
17012 5' -52.4 NC_004333.2 + 36206 0.67 0.827208
Target:  5'- gCCCGAGC-ACUUGGuCGuagcgaauGCCUuGCGUCGc -3'
miRNA:   3'- -GGGCUUGaUGGACU-GC--------UGGA-UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 11149 0.67 0.827208
Target:  5'- aCCCGAAUUuauCCccgaagucgaUGcCGACCUGCGUg- -3'
miRNA:   3'- -GGGCUUGAu--GG----------ACuGCUGGAUGCAgc -5'
17012 5' -52.4 NC_004333.2 + 23707 0.66 0.853681
Target:  5'- aCCGAGCgauugGCUcGcGCGAgUUGCGUCGg -3'
miRNA:   3'- gGGCUUGa----UGGaC-UGCUgGAUGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 9629 0.67 0.827208
Target:  5'- aCCG-GCUGCCggcGGCGcGCCUGCGccCGg -3'
miRNA:   3'- gGGCuUGAUGGa--CUGC-UGGAUGCa-GC- -5'
17012 5' -52.4 NC_004333.2 + 13061 0.67 0.827208
Target:  5'- gCUGAACUGCUUGACGAuguccgacaCCgacugGCGUg- -3'
miRNA:   3'- gGGCUUGAUGGACUGCU---------GGa----UGCAgc -5'
17012 5' -52.4 NC_004333.2 + 25191 0.68 0.768919
Target:  5'- uCUCGAACU-CgCUGcGCGACUcgACGUCGa -3'
miRNA:   3'- -GGGCUUGAuG-GAC-UGCUGGa-UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 11076 0.69 0.727048
Target:  5'- cCCCGcAGCUGCCcGACGuCCUcgauaGCG-CGa -3'
miRNA:   3'- -GGGC-UUGAUGGaCUGCuGGA-----UGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.