miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17012 5' -52.4 NC_004333.2 + 28535 0.69 0.705488
Target:  5'- -gCGAGCUgu-UGACGGCCaGCGUCGg -3'
miRNA:   3'- ggGCUUGAuggACUGCUGGaUGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 2177 0.7 0.683636
Target:  5'- aCCCacagGAACuUGCCUGACaGCUUGcCGUCGu -3'
miRNA:   3'- -GGG----CUUG-AUGGACUGcUGGAU-GCAGC- -5'
17012 5' -52.4 NC_004333.2 + 17557 0.7 0.683636
Target:  5'- gCCGcGCUGCUgcACGACCUgGCGUCc -3'
miRNA:   3'- gGGCuUGAUGGacUGCUGGA-UGCAGc -5'
17012 5' -52.4 NC_004333.2 + 9034 0.7 0.672629
Target:  5'- gCUC--GCUGCCuuUGGCGACCUgcgacACGUCGa -3'
miRNA:   3'- -GGGcuUGAUGG--ACUGCUGGA-----UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 17558 0.7 0.63942
Target:  5'- cCCCGAagcGCUGCaC-GACGACCUGaucggcaaGUCGc -3'
miRNA:   3'- -GGGCU---UGAUG-GaCUGCUGGAUg-------CAGC- -5'
17012 5' -52.4 NC_004333.2 + 7217 0.7 0.628323
Target:  5'- gCCCGAAacguuucGCCUGccguGCGACCgacugugGCGUCGc -3'
miRNA:   3'- -GGGCUUga-----UGGAC----UGCUGGa------UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 46742 0.71 0.595091
Target:  5'- aCCGAACUgACC-GACGcACUcgGCGUCGa -3'
miRNA:   3'- gGGCUUGA-UGGaCUGC-UGGa-UGCAGC- -5'
17012 5' -52.4 NC_004333.2 + 41714 0.73 0.466131
Target:  5'- aCCUGAugcgccuGCUACCUGACG-CCaGCGUgGa -3'
miRNA:   3'- -GGGCU-------UGAUGGACUGCuGGaUGCAgC- -5'
17012 5' -52.4 NC_004333.2 + 20731 0.74 0.447137
Target:  5'- gCCGAACUACCcgaaUGGCG-CCUG-GUCGa -3'
miRNA:   3'- gGGCUUGAUGG----ACUGCuGGAUgCAGC- -5'
17012 5' -52.4 NC_004333.2 + 41879 0.74 0.418047
Target:  5'- gCCCGAACaGCCcGAauuCGACCUGCG-CGu -3'
miRNA:   3'- -GGGCUUGaUGGaCU---GCUGGAUGCaGC- -5'
17012 5' -52.4 NC_004333.2 + 44887 0.75 0.399305
Target:  5'- gCCCGAcucGCUGCgccagCUGAUGAgCUGCGUCu -3'
miRNA:   3'- -GGGCU---UGAUG-----GACUGCUgGAUGCAGc -5'
17012 5' -52.4 NC_004333.2 + 40070 1.12 0.001508
Target:  5'- uCCCGAACUACCUGACGACCUACGUCGa -3'
miRNA:   3'- -GGGCUUGAUGGACUGCUGGAUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.