miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 37738 0.67 0.783239
Target:  5'- cUGCCGCGCcuGCGcgagaUCGacGAGCGUCguuUCGu -3'
miRNA:   3'- -ACGGCGCGu-CGCa----AGU--UUUGCAG---AGC- -5'
17013 5' -52.6 NC_004333.2 + 31190 0.67 0.772957
Target:  5'- aUGCCGCGaguugcGCGUUCGGuu--UCUCGg -3'
miRNA:   3'- -ACGGCGCgu----CGCAAGUUuugcAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 13545 0.67 0.772957
Target:  5'- uUGCCGC-CGGCGgcCAGgccgGAUGUgUCGg -3'
miRNA:   3'- -ACGGCGcGUCGCaaGUU----UUGCAgAGC- -5'
17013 5' -52.6 NC_004333.2 + 8677 0.67 0.772957
Target:  5'- gUGCCGU-CGGCGUUCAGcACGg--CGa -3'
miRNA:   3'- -ACGGCGcGUCGCAAGUUuUGCagaGC- -5'
17013 5' -52.6 NC_004333.2 + 21036 0.67 0.772957
Target:  5'- gGCCGCGCAGUGcugcUCcuGGgGaCUCGg -3'
miRNA:   3'- aCGGCGCGUCGCa---AGuuUUgCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 30891 0.67 0.772957
Target:  5'- cGCUGCGCcggccGGCGUUC---ACGUCg-- -3'
miRNA:   3'- aCGGCGCG-----UCGCAAGuuuUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 3556 0.67 0.77192
Target:  5'- gUGCCGCGCAGC-------GCGUCggcCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaaguuuUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 9729 0.67 0.76147
Target:  5'- cGUCGCGCcacGGaucgacaaaGUUCGAcgcggcaAGCGUCUCGa -3'
miRNA:   3'- aCGGCGCG---UCg--------CAAGUU-------UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 28847 0.67 0.759362
Target:  5'- gUGCCG-GCuGCGUUCGuagccggcgcgcucAAGCG-CUCGu -3'
miRNA:   3'- -ACGGCgCGuCGCAAGU--------------UUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 44315 0.67 0.759362
Target:  5'- cGCUGCGCccguccgaagaugaAGUGUUCGAcACG-CUCu -3'
miRNA:   3'- aCGGCGCG--------------UCGCAAGUUuUGCaGAGc -5'
17013 5' -52.6 NC_004333.2 + 35542 0.67 0.751944
Target:  5'- aGCUGUGCGGCGgUCAGAACuuggCcCGg -3'
miRNA:   3'- aCGGCGCGUCGCaAGUUUUGca--GaGC- -5'
17013 5' -52.6 NC_004333.2 + 22511 0.67 0.751944
Target:  5'- cGCCGCGUucGCGacggccggCAAGACGcUUUCGa -3'
miRNA:   3'- aCGGCGCGu-CGCaa------GUUUUGC-AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 47815 0.67 0.741237
Target:  5'- gGCC-UGCAGCuGUUCAAAGCGccgacgggcaUUUCGg -3'
miRNA:   3'- aCGGcGCGUCG-CAAGUUUUGC----------AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 37320 0.67 0.741237
Target:  5'- gGUCGCgGCGGUGcUCGAcGCG-CUCGa -3'
miRNA:   3'- aCGGCG-CGUCGCaAGUUuUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 44895 0.68 0.731502
Target:  5'- cGCUGCGcCAGCugaugagcuGCGUCUCGa -3'
miRNA:   3'- aCGGCGC-GUCGcaaguuu--UGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 12480 0.68 0.730414
Target:  5'- aGCCGa-CAcucGCGUUCGcgacugaaGGGCGUCUCGa -3'
miRNA:   3'- aCGGCgcGU---CGCAAGU--------UUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 44417 0.68 0.728237
Target:  5'- cUGCCGgGCucgcuggcugguGCGUgCGAGGCG-CUCGg -3'
miRNA:   3'- -ACGGCgCGu-----------CGCAaGUUUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 25636 0.68 0.719487
Target:  5'- uUGCgGCGUcgucAGCGcggUCgAAAGCGUCUUGc -3'
miRNA:   3'- -ACGgCGCG----UCGCa--AG-UUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 37301 0.68 0.708468
Target:  5'- cUGUCGCGcCGGCGUUCuucccgcgcGGCGUCa-- -3'
miRNA:   3'- -ACGGCGC-GUCGCAAGuu-------UUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 20499 0.68 0.708468
Target:  5'- cGCUGCaGC-GCGUUCAGGugcGCGaCUCGc -3'
miRNA:   3'- aCGGCG-CGuCGCAAGUUU---UGCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.