Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17014 | 3' | -58.2 | NC_004333.2 | + | 38654 | 0.69 | 0.368429 |
Target: 5'- gGGcGGCaCGGGCAaGUCGuacuuCGUCGaGCa -3' miRNA: 3'- aCCaCCG-GCCCGUcUAGUu----GCAGC-CG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 9272 | 0.69 | 0.359919 |
Target: 5'- uUGuUGGCCGuGCcGAUCAGCGcgaagCGGCg -3' miRNA: 3'- -ACcACCGGCcCGuCUAGUUGCa----GCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 19551 | 0.69 | 0.343314 |
Target: 5'- aUGG-GcGCCGGucGCAcGGUCGGCG-CGGCa -3' miRNA: 3'- -ACCaC-CGGCC--CGU-CUAGUUGCaGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 46182 | 0.7 | 0.311785 |
Target: 5'- gUGGgcgaccgagGGCUGGGCgcgucucgcgccGGAUCAGCGcCaGGCg -3' miRNA: 3'- -ACCa--------CCGGCCCG------------UCUAGUUGCaG-CCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 16575 | 0.71 | 0.262005 |
Target: 5'- ---cGGCCGagacGGCGcuuAUCAACGUCGGCa -3' miRNA: 3'- accaCCGGC----CCGUc--UAGUUGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 22182 | 0.72 | 0.230549 |
Target: 5'- cGGcGGCCGgcGGCGGuUCGGCGgcugCGGCc -3' miRNA: 3'- aCCaCCGGC--CCGUCuAGUUGCa---GCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 5036 | 0.72 | 0.228175 |
Target: 5'- aGGcGGCCaGGCGGccggcuguuggcCGACGUCGGCg -3' miRNA: 3'- aCCaCCGGcCCGUCua----------GUUGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 2700 | 0.73 | 0.19707 |
Target: 5'- cGGcGGCCGacaGGCcGAUCu-CGUCGGCg -3' miRNA: 3'- aCCaCCGGC---CCGuCUAGuuGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 16851 | 0.74 | 0.172489 |
Target: 5'- aGcUGGCCGGcauuGCGGGcgccgugcUCGGCGUCGGCg -3' miRNA: 3'- aCcACCGGCC----CGUCU--------AGUUGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 33156 | 0.74 | 0.159087 |
Target: 5'- aGGUGGCgaguuuCGcGGC--GUCGGCGUCGGCg -3' miRNA: 3'- aCCACCG------GC-CCGucUAGUUGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 39739 | 1.12 | 0.000276 |
Target: 5'- gUGGUGGCCGGGCAGAUCAACGUCGGCg -3' miRNA: 3'- -ACCACCGGCCCGUCUAGUUGCAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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