miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17015 3' -51.9 NC_004333.2 + 4754 0.66 0.848382
Target:  5'- cGUCAGCcCG-ACCCGAgcGUCUGCc- -3'
miRNA:   3'- -CGGUCGaGCuUGGGCUacUAGAUGuu -5'
17015 3' -51.9 NC_004333.2 + 42978 0.66 0.8147
Target:  5'- cGCCGGCggaCGAGCgggcggcgcucucgaCCGAUGGcuauuucgUCUACGAu -3'
miRNA:   3'- -CGGUCGa--GCUUG---------------GGCUACU--------AGAUGUU- -5'
17015 3' -51.9 NC_004333.2 + 40388 0.66 0.810781
Target:  5'- gGCCGaCUCGAACCCGGuUGAagacggGCAAa -3'
miRNA:   3'- -CGGUcGAGCUUGGGCU-ACUaga---UGUU- -5'
17015 3' -51.9 NC_004333.2 + 24235 0.67 0.790711
Target:  5'- gGCgGGCaCGAACCCGcacuacGUCUACAAg -3'
miRNA:   3'- -CGgUCGaGCUUGGGCuac---UAGAUGUU- -5'
17015 3' -51.9 NC_004333.2 + 26860 0.67 0.780399
Target:  5'- cGCuCGGCaaacacugCGAGCCCGAUGucaccuUCUGCc- -3'
miRNA:   3'- -CG-GUCGa-------GCUUGGGCUACu-----AGAUGuu -5'
17015 3' -51.9 NC_004333.2 + 23068 0.68 0.737606
Target:  5'- cGCCGuGCUCGccguGCCCGGagUGAcggauugcuacgUCUACAAc -3'
miRNA:   3'- -CGGU-CGAGCu---UGGGCU--ACU------------AGAUGUU- -5'
17015 3' -51.9 NC_004333.2 + 37861 0.68 0.737606
Target:  5'- uCCGGaCUCGAGCCCGAggccGGUgaGCGc -3'
miRNA:   3'- cGGUC-GAGCUUGGGCUa---CUAgaUGUu -5'
17015 3' -51.9 NC_004333.2 + 17298 0.68 0.715464
Target:  5'- gGCCGGCgcagcguccUCGAcauGCCCGAggaUGAUCUGa-- -3'
miRNA:   3'- -CGGUCG---------AGCU---UGGGCU---ACUAGAUguu -5'
17015 3' -51.9 NC_004333.2 + 26127 0.68 0.714346
Target:  5'- cGCCGuGCaCGAucuguccGCCCGcGUGAUCUGCGu -3'
miRNA:   3'- -CGGU-CGaGCU-------UGGGC-UACUAGAUGUu -5'
17015 3' -51.9 NC_004333.2 + 22210 0.68 0.692962
Target:  5'- gGCCuGCUCGAugCCGAgacGggCcGCAAa -3'
miRNA:   3'- -CGGuCGAGCUugGGCUa--CuaGaUGUU- -5'
17015 3' -51.9 NC_004333.2 + 37558 0.69 0.670205
Target:  5'- cGUCAGCUCGccGACgCGuUGGUCUACc- -3'
miRNA:   3'- -CGGUCGAGC--UUGgGCuACUAGAUGuu -5'
17015 3' -51.9 NC_004333.2 + 39729 0.71 0.522461
Target:  5'- gGCaAGCUCGGcaaagacuGCUCGAUGGUCUGCc- -3'
miRNA:   3'- -CGgUCGAGCU--------UGGGCUACUAGAUGuu -5'
17015 3' -51.9 NC_004333.2 + 46391 0.72 0.479158
Target:  5'- aUCGGCUCGAACgCCG-UGAUCUaaGCGGg -3'
miRNA:   3'- cGGUCGAGCUUG-GGCuACUAGA--UGUU- -5'
17015 3' -51.9 NC_004333.2 + 39417 1.09 0.001621
Target:  5'- cGCCAGCUCGAACCCGAUGAUCUACAAg -3'
miRNA:   3'- -CGGUCGAGCUUGGGCUACUAGAUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.