Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17015 | 5' | -53.7 | NC_004333.2 | + | 39453 | 1.06 | 0.001977 |
Target: 5'- cAACGGCAAGAUGAUCGCGGACUCGAGc -3' miRNA: 3'- -UUGCCGUUCUACUAGCGCCUGAGCUC- -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 40867 | 0.73 | 0.347734 |
Target: 5'- -cCGGC--GAUGGUCGCGcGACUCGGu -3' miRNA: 3'- uuGCCGuuCUACUAGCGC-CUGAGCUc -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 8223 | 0.71 | 0.430703 |
Target: 5'- cGCGGCAGGAUGA-CGCcGGCccgcgCGAGg -3' miRNA: 3'- uUGCCGUUCUACUaGCGcCUGa----GCUC- -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 23121 | 0.71 | 0.440619 |
Target: 5'- cGGCGGCAcuGAUGuugcgCGCGGACUgGAc -3' miRNA: 3'- -UUGCCGUu-CUACua---GCGCCUGAgCUc -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 41505 | 0.7 | 0.535078 |
Target: 5'- aAGCGGC-GGAUGcgCGCcuGCUCGAGc -3' miRNA: 3'- -UUGCCGuUCUACuaGCGccUGAGCUC- -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 22960 | 0.68 | 0.646981 |
Target: 5'- gAACGGCAGc---GUCGCGGGCgUCGAc -3' miRNA: 3'- -UUGCCGUUcuacUAGCGCCUG-AGCUc -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 30639 | 0.67 | 0.70301 |
Target: 5'- cGCGGCAAGg----CGCGGcgugcgcuGCUCGAGc -3' miRNA: 3'- uUGCCGUUCuacuaGCGCC--------UGAGCUC- -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 32836 | 0.67 | 0.658261 |
Target: 5'- cACGuGCAAcAUGAgCGCGGccuGCUCGAGu -3' miRNA: 3'- uUGC-CGUUcUACUaGCGCC---UGAGCUC- -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 38013 | 0.67 | 0.690788 |
Target: 5'- cGACGGCuGAGGUGAacccguaUCGCGGuCgCGAa -3' miRNA: 3'- -UUGCCG-UUCUACU-------AGCGCCuGaGCUc -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 6753 | 0.66 | 0.735849 |
Target: 5'- cACGGCGccccGGUCGCGcGcCUCGAGg -3' miRNA: 3'- uUGCCGUucuaCUAGCGC-CuGAGCUC- -5' |
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17015 | 5' | -53.7 | NC_004333.2 | + | 39061 | 0.66 | 0.746592 |
Target: 5'- gGACGGCGAGua---CGCGcGACUCGuGc -3' miRNA: 3'- -UUGCCGUUCuacuaGCGC-CUGAGCuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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