miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17016 5' -51.4 NC_004333.2 + 39322 1.09 0.001695
Target:  5'- cGCAGCCGCGAUACCUUAACCAGACAAg -3'
miRNA:   3'- -CGUCGGCGCUAUGGAAUUGGUCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 25776 0.75 0.33401
Target:  5'- cGCAugcGCCGCGAaGCCUcGACCuGGCAGa -3'
miRNA:   3'- -CGU---CGGCGCUaUGGAaUUGGuCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 32463 0.73 0.437142
Target:  5'- aGC-GCCGCGAcgaGCCgcagcaugUAACCGGACAAc -3'
miRNA:   3'- -CGuCGGCGCUa--UGGa-------AUUGGUCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 35063 0.73 0.468294
Target:  5'- cGCAGCuCGCGAUGCCgu-ACaucGACAAc -3'
miRNA:   3'- -CGUCG-GCGCUAUGGaauUGgu-CUGUU- -5'
17016 5' -51.4 NC_004333.2 + 25942 0.71 0.533744
Target:  5'- cGCGG-CGCGAUGCCggcGGCCAGuACGc -3'
miRNA:   3'- -CGUCgGCGCUAUGGaa-UUGGUC-UGUu -5'
17016 5' -51.4 NC_004333.2 + 45434 0.71 0.590623
Target:  5'- gGCGGCCGCGAUcucgGCUgUGACgGGcACGAa -3'
miRNA:   3'- -CGUCGGCGCUA----UGGaAUUGgUC-UGUU- -5'
17016 5' -51.4 NC_004333.2 + 408 0.7 0.602153
Target:  5'- -gAGCgCGCGAU-CCUUGAUCaAGACAGg -3'
miRNA:   3'- cgUCG-GCGCUAuGGAAUUGG-UCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 2884 0.7 0.64845
Target:  5'- cGCAGCgGCGAggcugAUgUUGGCCgAGACGu -3'
miRNA:   3'- -CGUCGgCGCUa----UGgAAUUGG-UCUGUu -5'
17016 5' -51.4 NC_004333.2 + 17625 0.69 0.660011
Target:  5'- cCGGCCGCGcccgGUGCCgUGGCC-GACAc -3'
miRNA:   3'- cGUCGGCGC----UAUGGaAUUGGuCUGUu -5'
17016 5' -51.4 NC_004333.2 + 45766 0.69 0.671544
Target:  5'- cGCuGCCGCuGUACggcGACCAGGCGAc -3'
miRNA:   3'- -CGuCGGCGcUAUGgaaUUGGUCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 6324 0.69 0.683036
Target:  5'- cGCAGCCGUGAggacgACCgc-ACCGcGCGAu -3'
miRNA:   3'- -CGUCGGCGCUa----UGGaauUGGUcUGUU- -5'
17016 5' -51.4 NC_004333.2 + 33436 0.69 0.683036
Target:  5'- cGUAGCCGCGAguccgGCagcaUUGgcagcggcgcGCCGGGCGAu -3'
miRNA:   3'- -CGUCGGCGCUa----UGg---AAU----------UGGUCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 8886 0.68 0.717137
Target:  5'- uUAGCCGCGc-ACCUUGAUCuuGGCGAg -3'
miRNA:   3'- cGUCGGCGCuaUGGAAUUGGu-CUGUU- -5'
17016 5' -51.4 NC_004333.2 + 29973 0.68 0.728335
Target:  5'- cGCGGCCGCGcUGCC---ACCGG-CGc -3'
miRNA:   3'- -CGUCGGCGCuAUGGaauUGGUCuGUu -5'
17016 5' -51.4 NC_004333.2 + 22201 0.67 0.792823
Target:  5'- gGCGGCUGCG--GCCUgcucgauGCCgAGACGGg -3'
miRNA:   3'- -CGUCGGCGCuaUGGAau-----UGG-UCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 31492 0.67 0.796916
Target:  5'- uGCAGCggugcuuccgcaccgCGCGGUGCagc-ACCGGGCAGg -3'
miRNA:   3'- -CGUCG---------------GCGCUAUGgaauUGGUCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 40235 0.67 0.802998
Target:  5'- cGCGGCCGgccaacCGAUcgacgaauucgaACCUuucUGACUAGGCAAa -3'
miRNA:   3'- -CGUCGGC------GCUA------------UGGA---AUUGGUCUGUU- -5'
17016 5' -51.4 NC_004333.2 + 22976 0.67 0.812973
Target:  5'- gGCAGCguCGCGGUACCggucGCCgAGAgCAGg -3'
miRNA:   3'- -CGUCG--GCGCUAUGGaau-UGG-UCU-GUU- -5'
17016 5' -51.4 NC_004333.2 + 24813 0.67 0.812973
Target:  5'- gGCAGCUGCGcgACCUgcacguugAAgUAGACc- -3'
miRNA:   3'- -CGUCGGCGCuaUGGAa-------UUgGUCUGuu -5'
17016 5' -51.4 NC_004333.2 + 16308 0.66 0.822739
Target:  5'- gGCuuGCCGCGAUucaGCag-AugCAGGCAAa -3'
miRNA:   3'- -CGu-CGGCGCUA---UGgaaUugGUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.