miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 14096 0.68 0.609773
Target:  5'- gCGCGAUCGuCA-UGCCGUCGaCGcuauCGu -3'
miRNA:   3'- -GCGCUAGCuGUgACGGCAGC-GCuu--GC- -5'
17017 5' -55.2 NC_004333.2 + 33801 0.68 0.587963
Target:  5'- -aCGAUCGAUGCUGCgGaCGCGAu-- -3'
miRNA:   3'- gcGCUAGCUGUGACGgCaGCGCUugc -5'
17017 5' -55.2 NC_004333.2 + 25220 0.68 0.598854
Target:  5'- aCGCccgCGACGCUGCCGUuCGgGuuCGa -3'
miRNA:   3'- -GCGcuaGCUGUGACGGCA-GCgCuuGC- -5'
17017 5' -55.2 NC_004333.2 + 26343 0.68 0.577109
Target:  5'- uCGCGGuauUCGAUgggAUUGCCGUCGaggaaugccuCGAACGc -3'
miRNA:   3'- -GCGCU---AGCUG---UGACGGCAGC----------GCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 37800 0.68 0.587963
Target:  5'- uGCGAagCGGCGCgaugcgaaGCgCGUCGCGAuCGa -3'
miRNA:   3'- gCGCUa-GCUGUGa-------CG-GCAGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 9047 0.68 0.587963
Target:  5'- gGCGAccugCGACACgucgacGCCGaucugCGUGAGCGc -3'
miRNA:   3'- gCGCUa---GCUGUGa-----CGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 37437 0.68 0.598854
Target:  5'- gCGCGGUaCGAUACgccGCCaGUCGgGAaaACGa -3'
miRNA:   3'- -GCGCUA-GCUGUGa--CGG-CAGCgCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 28285 0.68 0.609773
Target:  5'- gCGCGGaUGGCccagaGCUGCUGagCGCGGGCGu -3'
miRNA:   3'- -GCGCUaGCUG-----UGACGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 7485 0.68 0.620712
Target:  5'- gGCGAUCGGguUgguguucuuUGCgGUCGCGAguGCGc -3'
miRNA:   3'- gCGCUAGCUguG---------ACGgCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 43322 0.68 0.620712
Target:  5'- aGCGGcaUCGGCACgGCgCG-CGCGuACGg -3'
miRNA:   3'- gCGCU--AGCUGUGaCG-GCaGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 39487 0.68 0.620712
Target:  5'- -aCGGUCGGCACguucGCCGU-GCuGAACGc -3'
miRNA:   3'- gcGCUAGCUGUGa---CGGCAgCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 41571 0.68 0.598854
Target:  5'- uGCGAcugCGGCGCUgggcggcgcGCCGUgGCGGcgauGCGg -3'
miRNA:   3'- gCGCUa--GCUGUGA---------CGGCAgCGCU----UGC- -5'
17017 5' -55.2 NC_004333.2 + 12051 0.68 0.620712
Target:  5'- gCGcCGGUCG-CGCagGCCGUCGCcAACc -3'
miRNA:   3'- -GC-GCUAGCuGUGa-CGGCAGCGcUUGc -5'
17017 5' -55.2 NC_004333.2 + 2923 0.68 0.62509
Target:  5'- aGCGGUCGugACcgucaacgUGCCGcuguagcccugcagcUgCGCGAGCGu -3'
miRNA:   3'- gCGCUAGCugUG--------ACGGC---------------A-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 30827 0.68 0.620712
Target:  5'- aGaCGGUCGACACcG-CGUCGUaGAACGc -3'
miRNA:   3'- gC-GCUAGCUGUGaCgGCAGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 27521 0.68 0.609773
Target:  5'- aGCGAUCGACgugucgaucgcaAgUGCCG-CGCcgGGGCGa -3'
miRNA:   3'- gCGCUAGCUG------------UgACGGCaGCG--CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 45029 0.68 0.587963
Target:  5'- cCGCGcgUGGCGCUGgCGgCGCGcaAACGc -3'
miRNA:   3'- -GCGCuaGCUGUGACgGCaGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 22879 0.69 0.544847
Target:  5'- gCGCGAUCG-UACUGgCGcUCGUGA-CGa -3'
miRNA:   3'- -GCGCUAGCuGUGACgGC-AGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 17168 0.69 0.544847
Target:  5'- gCGCG-UCGACAagGCCGcUGCGAGCc -3'
miRNA:   3'- -GCGCuAGCUGUgaCGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 25163 0.69 0.543781
Target:  5'- -cCGAUCGACACgcucgccUGCCGcCGCGucuCGa -3'
miRNA:   3'- gcGCUAGCUGUG-------ACGGCaGCGCuu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.