miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 25163 0.69 0.543781
Target:  5'- -cCGAUCGACACgcucgccUGCCGcCGCGucuCGa -3'
miRNA:   3'- gcGCUAGCUGUG-------ACGGCaGCGCuu-GC- -5'
17017 5' -55.2 NC_004333.2 + 41385 0.69 0.534218
Target:  5'- gGCGAagaUCGGCGC-GCUGUCGUauGCGa -3'
miRNA:   3'- gCGCU---AGCUGUGaCGGCAGCGcuUGC- -5'
17017 5' -55.2 NC_004333.2 + 37068 0.69 0.534218
Target:  5'- gGCGAuuUCGugcCGCUGuUCGUCGCGcACGa -3'
miRNA:   3'- gCGCU--AGCu--GUGAC-GGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 17168 0.69 0.544847
Target:  5'- gCGCG-UCGACAagGCCGcUGCGAGCc -3'
miRNA:   3'- -GCGCuAGCUGUgaCGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 32664 0.69 0.513191
Target:  5'- uCGCGcUUGACGCgccGCCGgugaccgcCGCGAGCa -3'
miRNA:   3'- -GCGCuAGCUGUGa--CGGCa-------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 42758 0.69 0.527876
Target:  5'- uGcCGA-CGACGCUGCCGcgauggcagaagaaCGCGAACa -3'
miRNA:   3'- gC-GCUaGCUGUGACGGCa-------------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 20734 0.69 0.5663
Target:  5'- gGCGcgCG-CGCUGCCGgacaUCGCcGACGc -3'
miRNA:   3'- gCGCuaGCuGUGACGGC----AGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 26629 0.69 0.555543
Target:  5'- gCGuUGAUCGuugucGCACcGCCGcUCGUGAGCGu -3'
miRNA:   3'- -GC-GCUAGC-----UGUGaCGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 28665 0.69 0.544847
Target:  5'- uCGCGGUCGcagaauuccgguGCguGCUGCUGccagaUCGCGAGCa -3'
miRNA:   3'- -GCGCUAGC------------UG--UGACGGC-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 22879 0.69 0.544847
Target:  5'- gCGCGAUCG-UACUGgCGcUCGUGA-CGa -3'
miRNA:   3'- -GCGCUAGCuGUGACgGC-AGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 18084 0.69 0.534218
Target:  5'- uCGCGcAUCGACGCguuCCGUCgGCGcuACGg -3'
miRNA:   3'- -GCGC-UAGCUGUGac-GGCAG-CGCu-UGC- -5'
17017 5' -55.2 NC_004333.2 + 45261 0.7 0.502804
Target:  5'- aGCGcgCGugGC-GCCuuggcUCGCGAACGa -3'
miRNA:   3'- gCGCuaGCugUGaCGGc----AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 28896 0.7 0.496616
Target:  5'- uCGCGcUCGGCGCaggccggcgcauacuUGCCGUCggugcguaGCGGGCGc -3'
miRNA:   3'- -GCGCuAGCUGUG---------------ACGGCAG--------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 30229 0.7 0.482314
Target:  5'- -uCGAUCGACGC-GCCGcgCGCGAucaguGCGu -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCa-GCGCU-----UGC- -5'
17017 5' -55.2 NC_004333.2 + 15592 0.7 0.4813
Target:  5'- -aCGGUCGcACGCUGCuCGUCggucacgguuucgGCGAACGu -3'
miRNA:   3'- gcGCUAGC-UGUGACG-GCAG-------------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 9190 0.7 0.472222
Target:  5'- uCGCGA-CGGCAgUGUCGaUCGCGGuGCGc -3'
miRNA:   3'- -GCGCUaGCUGUgACGGC-AGCGCU-UGC- -5'
17017 5' -55.2 NC_004333.2 + 22811 0.7 0.462237
Target:  5'- gGUGuUCGucGCGCUGUCGcUCGUGAACGu -3'
miRNA:   3'- gCGCuAGC--UGUGACGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 47025 0.7 0.462237
Target:  5'- cCGCGAUCGgauauGCAgUGCaaCGUCGCGcGCa -3'
miRNA:   3'- -GCGCUAGC-----UGUgACG--GCAGCGCuUGc -5'
17017 5' -55.2 NC_004333.2 + 27954 0.7 0.462237
Target:  5'- uCGCGGUCGAuCGCcGCCacgaaagCGCGAGCc -3'
miRNA:   3'- -GCGCUAGCU-GUGaCGGca-----GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 45421 0.7 0.472222
Target:  5'- aCGCGAcCGGCACgGCgGcCGCGAucuCGg -3'
miRNA:   3'- -GCGCUaGCUGUGaCGgCaGCGCUu--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.